PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc054117.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 346aa MW: 39351.2 Da PI: 7.1196

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc054117.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.7	9.5e-12	6	43	2	40
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 g+W++eEde l++ ++++G+++W+ I + ++ R++k+c Cse_sc054117.1_g010.1 6 GAWSPEEDEMLLNPIEKHGPRDWSPICKSIP-DRSDKSC 43 89***************************.***** PP
2	Myb_DNA-binding	40.9	4.7e-13	53	95	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ede l+++++++G++ W++I++ + gR++ +c srw+++ Cse_sc054117.1_g010.1 53 SFTPKEDEMLLHLFEKHGPN-WSLISNSIR-GRSGQSCTSRWLSL 95 69**************77.*****.*********976 PP
3	Myb_DNA-binding	38.5	2.7e-12	107	147	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W++eEde l ++vk++G + W++I++ ++ g ++k+ +rw++ Cse_sc054117.1_g010.1 107 WSPEEDEMLENLVKEHGRN-WSLISKSIP-GSSGKSSMLRWLS 147 ***************66.*****.*********87 PP
4	Myb_DNA-binding	39.4	1.4e-12	151	191	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T Ede l ++vk++G++ W++I++ ++ gR+ +c srw+ Cse_sc054117.1_g010.1 151 PFTRGEDEMLQNLVKKHGPN-WSLISKSLP-GRSSQSCLSRWL 191 68999***********77.*****.*********6 PP
5	Myb_DNA-binding	40.6	6.1e-13	196	238	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEde +++a++++G + W++I r + gRt+ +k++w++ Cse_sc054117.1_g010.1 196 PFTHEEDETILRAHARFGDK-WSAIGRLLT-GRTDDVIKNHWNSI 238 89**************99.****9.*********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MDQIEGAWSP EEDEMLLNPI EKHGPRDWSP ICKSIPDRSD KSCWSSCFSL QRSFTPKEDE 60 MLLHLFEKHG PNWSLISNSI RGRSGQSCTS RWLSLVEKEM DQIKRLWSPE EDEMLENLVK 120 EHGRNWSLIS KSIPGSSGKS SMLRWLSLYR PFTRGEDEML QNLVKKHGPN WSLISKSLPG 180 RSSQSCLSRW LFVHRPFTHE EDETILRAHA RFGDKWSAIG RLLTGRTDDV IKNHWNSILK 240 GKSSSMTNED ITTRVCMCIP LFRCSSAPGR GQGSSYIHDG NLSHEVGGVR RQPLSMDEMG 300 RDNMSSGSTH SYSGDESAPS WNDLYNRDSS PTMTESGRLL EFSPGK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MDQIEGAWSP EEDEMLLNPI EKHGPRDWSP ICKSIPDRSD KSCWSSCFSL QRSFTPKEDE  60
MLLHLFEKHG PNWSLISNSI RGRSGQSCTS RWLSLVEKEM DQIKRLWSPE EDEMLENLVK  120
EHGRNWSLIS KSIPGSSGKS SMLRWLSLYR PFTRGEDEML QNLVKKHGPN WSLISKSLPG  180
RSSQSCLSRW LFVHRPFTHE EDETILRAHA RFGDKWSAIG RLLTGRTDDV IKNHWNSILK  240
GKSSSMTNED ITTRVCMCIP LFRCSSAPGR GQGSSYIHDG NLSHEVGGVR RQPLSMDEMG  300
RDNMSSGSTH SYSGDESAPS WNDLYNRDSS PTMTESGRLL EFSPGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-35	MYB family protein