PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc053981.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 15970.7 Da PI: 9.5032 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.3 | 3.1e-11 | 14 | 47 | 7 | 40 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviif 40 + rqvt+ kR++g++K + L +LC+++v+++++ Cse_sc053981.1_g010.1 14 RARQVTLQKRKAGLIKIMNDLKILCGVDVCLVMY 47 579*****************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence |
MTRPAMKQFK LDPRARQVTL QKRKAGLIKI MNDLKILCGV DVCLVMYETP DAPAKVWPSH 60 SEAVRLIQEY EDAKMSSPNP ELDPKAFHSL NTRTCLTVKY KSKDEEIAAL LKKRNELMIF 120 KAELDRQINL ELEKNREN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 5e-13 | M-type_MADS family protein |