PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc053337.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 469aa MW: 54203.3 Da PI: 9.2242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc053337.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.7	8e-13	95	200	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkke 71 Y eYA ++ Fs+rks+sk++ +ge+t++ vC++ k++++ k + ++r+++ t t+ ka+++ + Cse_sc053337.1_g020.1 95 IYLEYALKARFSIRKSTSKRK--KGEVTHKYIVCNRAVKPRKTIVKdtlahasqtvdnqkdgvnKPMQKRNSNYTVTDFKACVRFRAV 180 799***********99988..999**********99988889********9997777888999999********** PP FAR1 72 k.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc053337.1_g020.1 181 HgTSAFKLYEFVENHNHPLL 200 9***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MDSTTGNYDQ EDTNVPVVSP MQTEANVSIQ SPINDEQVNS NEDVSTEYSD LDDSETDDEC 60 IPTPKGHKYW IPKVPADEKP SEGNVFDTFD EAYDIYLEYA LKARFSIRKS TSKRKKGEVT 120 HKYIVCNRAV KPRKTIVKDT LAHASQTVDN QKDGVNKPMQ KRNSNYTVTD FKACVRFRAV 180 HGTSAFKLYE FVENHNHPLL DENNTGLLKA RRKLYFSDKL FIHRASLSNI GPTKAHRLRV 240 AFMGSYQKVR GKPSDRKNFR RSVNKYIGPR DAQMSVDKMN DRKKHVPNFS FEYHTVDDVL 300 SRMLWADETM KCNYNEFGDF HLMLRIAQTA AMEKQQYVQR VMDNHTFETT PVMFTDLPIE 360 RHACTVYSRS TFREVQKKIL KGLYACSQIS VTSEEGAIVS IIQQKNKQNG VVFNAKVVLN 420 ESDGSFGRHG YLCRHIFCVF RIYSIDQIPE RYVSKRWRKD VLPSHIYTN

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MDSTTGNYDQ EDTNVPVVSP MQTEANVSIQ SPINDEQVNS NEDVSTEYSD LDDSETDDEC  60
IPTPKGHKYW IPKVPADEKP SEGNVFDTFD EAYDIYLEYA LKARFSIRKS TSKRKKGEVT  120
HKYIVCNRAV KPRKTIVKDT LAHASQTVDN QKDGVNKPMQ KRNSNYTVTD FKACVRFRAV  180
HGTSAFKLYE FVENHNHPLL DENNTGLLKA RRKLYFSDKL FIHRASLSNI GPTKAHRLRV  240
AFMGSYQKVR GKPSDRKNFR RSVNKYIGPR DAQMSVDKMN DRKKHVPNFS FEYHTVDDVL  300
SRMLWADETM KCNYNEFGDF HLMLRIAQTA AMEKQQYVQR VMDNHTFETT PVMFTDLPIE  360
RHACTVYSRS TFREVQKKIL KGLYACSQIS VTSEEGAIVS IIQQKNKQNG VVFNAKVVLN  420
ESDGSFGRHG YLCRHIFCVF RIYSIDQIPE RYVSKRWRKD VLPSHIYTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	138	KRKKGEVTHKYIVCNRAVKPRKTIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-13	FAR1 family protein