PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc051806.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 33200.3 Da PI: 8.6203 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.4 | 7.9e-42 | 30 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF+Ptd+e+v +yL +kv + +l++ +vi+e+ +i++++PwdLp + e+e+yfFsk++ +y +g+r nr+ ++gyWkatg Cse_sc051806.1_g030.1 30 LPPGFRFQPTDQEIVFQYLIRKVFSCPLPT-SVIPEIvNICNFNPWDLPGE---WEQETYFFSKKEVNYGHGNRVNRKSSEGYWKATG 113 79***************************9.7888888***********44...4689****************************** PP NAM 88 kdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++++ k+ +g+kktLvfy +++p++++t+W+mheyrl Cse_sc051806.1_g030.1 114 FDKHITKCcnnnpmarkKDMITGMKKTLVFY-KSKPSTTRTHWIMHEYRL 162 *****9986666665444444**********.688888**********98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence |
MSTEDRNHAE NPSDGNKGKL TFVRDGAIKL PPGFRFQPTD QEIVFQYLIR KVFSCPLPTS 60 VIPEIVNICN FNPWDLPGEW EQETYFFSKK EVNYGHGNRV NRKSSEGYWK ATGFDKHITK 120 CCNNNPMARK KDMITGMKKT LVFYKSKPST TRTHWIMHEY RLVHSTSSPS STTSNDKVPF 180 LDLNFYIKFS NNIESSLEAN KKSWIQLGNW VLCHVLLNKR SRKSVEDDNY KRLDSLDRLT 240 NQNFMSNITV PTDCDNESSS CSSSSSCGSS VVTQEVSSSR KPIDCEETKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-53 | NAC family protein |