PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc049946.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 620aa MW: 71551.1 Da PI: 7.4491

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc049946.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.7	1.8e-13	98	203	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkke 71 +Y eYA + s+rks+sk++ +ge+t+r vC++ gk++++ k + +++r+++ + t+C+a+++ + Cse_sc049946.1_g020.1 98 MYLEYALKDRVSIRKSTSKRK--KGEVTHRYIVCNRAGKPRKTIVKdtlaqssqtvdnqkngsnKPRQKRNSNYSATDCNACVRFRAI 183 89**********9998887..999***********9988889*********98777788889999*********** PP FAR1 72 k.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc049946.1_g020.1 184 HgTSAFKLYECVENHNHPLL 203 9***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MDPSIGNDHH EEVNVTVVSP MQTEANVPGQ SSRNDDQVHV NEDLSSGTNE YSDLEDSESD 60 DECIPTPKGH KYWVPEVPAD EKPSEGNVFD TFDEAYDMYL EYALKDRVSI RKSTSKRKKG 120 EVTHRYIVCN RAGKPRKTIV KDTLAQSSQT VDNQKNGSNK PRQKRNSNYS ATDCNACVRF 180 RAIHGTSAFK LYECVENHNH PLLDENNTDL LKARRKLDFS DKLFIHWASL SNVGPTKAHR 240 LRVAFMGSYQ KVRGKPSDWK NFRRSVNKYI GPRDAQMLID KMNARKKHVP NFSFEYHTVD 300 DVLSCMFWAD ETMKCNYNEF GVVSFDATYR TNRYRMIFVP FTDIDHNQKC VTFGAALISD 360 ETIDSYKWIL TSFKKDHVKE PILAVTDQDP ALRTAVEAVF PEAHHRLCMW HITQKLPGKI 420 CGEVDSHSEF KKLFHKLIWN VFIEPSEFEE RWHALIGMFN LSENKWLSEM FKMRDLWIPA 480 YFKELPMCCL IKTTSRSESS NAFFRIFSHS GNMLVQFMLC FEAAIEKQRY VQRVMDNRTF 540 ESTPVMFTDL PIERHACSVY SRSIFREVQK EILKGLYACS QISVTSEEGV TVSIIQQKNK 600 ENAVVINAKV HLKESDGSVT

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MDPSIGNDHH EEVNVTVVSP MQTEANVPGQ SSRNDDQVHV NEDLSSGTNE YSDLEDSESD  60
DECIPTPKGH KYWVPEVPAD EKPSEGNVFD TFDEAYDMYL EYALKDRVSI RKSTSKRKKG  120
EVTHRYIVCN RAGKPRKTIV KDTLAQSSQT VDNQKNGSNK PRQKRNSNYS ATDCNACVRF  180
RAIHGTSAFK LYECVENHNH PLLDENNTDL LKARRKLDFS DKLFIHWASL SNVGPTKAHR  240
LRVAFMGSYQ KVRGKPSDWK NFRRSVNKYI GPRDAQMLID KMNARKKHVP NFSFEYHTVD  300
DVLSCMFWAD ETMKCNYNEF GVVSFDATYR TNRYRMIFVP FTDIDHNQKC VTFGAALISD  360
ETIDSYKWIL TSFKKDHVKE PILAVTDQDP ALRTAVEAVF PEAHHRLCMW HITQKLPGKI  420
CGEVDSHSEF KKLFHKLIWN VFIEPSEFEE RWHALIGMFN LSENKWLSEM FKMRDLWIPA  480
YFKELPMCCL IKTTSRSESS NAFFRIFSHS GNMLVQFMLC FEAAIEKQRY VQRVMDNRTF  540
ESTPVMFTDL PIERHACSVY SRSIFREVQK EILKGLYACS QISVTSEEGV TVSIIQQKNK  600
ENAVVINAKV HLKESDGSVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	141	KRKKGEVTHRYIVCNRAGKPRKTIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-58	FAR1 family protein