PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc049044.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 571aa MW: 64336.5 Da PI: 7.4989

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc049044.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4.2e-08	211	231	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G+C++Gd C +aHg Cse_sc049044.1_g020.1 211 PCPEFRK-GICRRGDLCEYAHG 231 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MNQSDDTVAK LLKLAASNDI RGFTELIGHD PSSVDQVGQW YVLRKGSTKV VPENRTPLMV 60 ASMYGSVDVL KKILSLSRTD VNRSTGIDQT TALHCAASGE SLNVVDAVKL LLEKGADPNT 120 IDANGLRPMD MIVDSPKLPE TQNVLHELLK PTDVLRIKNA RNYTDEFMMY SFKVMQCSRS 180 LLHNLEQCPF AHIGENVGRR DPHKYPYSCV PCPEFRKGIC RRGDLCEYAH GLLECWLHPS 240 RYRTRLCKYG MSCDRELCSF AHKPEELRNV GSPSALKPPL PPSGNRMLNC QQPNVPTLLS 300 PGRNFQSSRL SDQLMFSPRK HLSDFKQCRS MSPQSIESNT PIRARRLNLD PDYQHQQPQI 360 RNLSSQELGS QWGSSSWEPD WAVNKGELDV SWIQSSRSSD LSSLSLRNNL SVSTQLQQQQ 420 NMVSPFNMNF SPQNAPFGVQ SMSPGSIEAI SPMSGASVQN MDLKNQHQRE LRNLSSRELG 480 SNSVDSWSGW GSLSGKQDWA VNTEEPKFSF FQSPLEEKPH EVEGAVYDGD ASRLKNELMQ 540 LDRHVAQEDG RGWQYRSDMV RKEEMEKKSN T

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MNQSDDTVAK LLKLAASNDI RGFTELIGHD PSSVDQVGQW YVLRKGSTKV VPENRTPLMV  60
ASMYGSVDVL KKILSLSRTD VNRSTGIDQT TALHCAASGE SLNVVDAVKL LLEKGADPNT  120
IDANGLRPMD MIVDSPKLPE TQNVLHELLK PTDVLRIKNA RNYTDEFMMY SFKVMQCSRS  180
LLHNLEQCPF AHIGENVGRR DPHKYPYSCV PCPEFRKGIC RRGDLCEYAH GLLECWLHPS  240
RYRTRLCKYG MSCDRELCSF AHKPEELRNV GSPSALKPPL PPSGNRMLNC QQPNVPTLLS  300
PGRNFQSSRL SDQLMFSPRK HLSDFKQCRS MSPQSIESNT PIRARRLNLD PDYQHQQPQI  360
RNLSSQELGS QWGSSSWEPD WAVNKGELDV SWIQSSRSSD LSSLSLRNNL SVSTQLQQQQ  420
NMVSPFNMNF SPQNAPFGVQ SMSPGSIEAI SPMSGASVQN MDLKNQHQRE LRNLSSRELG  480
SNSVDSWSGW GSLSGKQDWA VNTEEPKFSF FQSPLEEKPH EVEGAVYDGD ASRLKNELMQ  540
LDRHVAQEDG RGWQYRSDMV RKEEMEKKSN T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	9e-94	C3H family protein