PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc047619.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 389aa MW: 45076.4 Da PI: 9.048

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc047619.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64	4.3e-20	56	151	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 k+Y++YA ++GFsvr s++++ ++g + ++ +vC+keg ++ +k+ +e++ rt++ +rtgC a++k k+++ + k+e++++ Cse_sc047619.1_g010.1 56 KMYENYADKAGFSVRLSTQNTL-KSGIVERKYLVCNKEGLPKGVNKDtmseetSETQIRTSSISRTGCMARVKFKLNSdHTKYELYDF 142 68*************99998.7888*********999988888888778888899*************99**** PP FAR1 82 eleHnHela 90 e++HnH++ Cse_sc047619.1_g010.1 143 EEHHNHTFI 151 ****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MKLNFFEGIH YIKQDDSDIC EEVEVEGGDF HYKPIVDESL KPKIGTEYTT IEECIKMYEN 60 YADKAGFSVR LSTQNTLKSG IVERKYLVCN KEGLPKGVNK DTMSEETSET QIRTSSISRT 120 GCMARVKFKL NSDHTKYELY DFEEHHNHTF IPVVYRNLSK KRKKMSHKQQ IYMQQLGGTN 180 IGATRAHHLY AATNGGYDSV DATETEFRNN KRDLNSHIGD SDAQMLITKM ENRKKHVANF 240 SFEYAVENSE LTSLFWADEM AKYNYKEFGD TISFDATFRT NKYKMVFVPF TGIDNHKKCV 300 TFGAGMLSNE TTKSYIWLLS CFLKAFSKQP RLVVTDQDPA MRKAVAAVFK ESKHRLCMWH 360 ITNKLPFKIC KTILDNGTFR RRLHRLVWS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MKLNFFEGIH YIKQDDSDIC EEVEVEGGDF HYKPIVDESL KPKIGTEYTT IEECIKMYEN  60
YADKAGFSVR LSTQNTLKSG IVERKYLVCN KEGLPKGVNK DTMSEETSET QIRTSSISRT  120
GCMARVKFKL NSDHTKYELY DFEEHHNHTF IPVVYRNLSK KRKKMSHKQQ IYMQQLGGTN  180
IGATRAHHLY AATNGGYDSV DATETEFRNN KRDLNSHIGD SDAQMLITKM ENRKKHVANF  240
SFEYAVENSE LTSLFWADEM AKYNYKEFGD TISFDATFRT NKYKMVFVPF TGIDNHKKCV  300
TFGAGMLSNE TTKSYIWLLS CFLKAFSKQP RLVVTDQDPA MRKAVAAVFK ESKHRLCMWH  360
ITNKLPFKIC KTILDNGTFR RRLHRLVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	164	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-53	FAR1 family protein