PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc047563.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 668aa MW: 76235 Da PI: 7.367

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc047563.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.2	6.2e-09	130	213	3	80
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtk 80 Y +YA++ GF vrks +k+ r+g ++++ +vC++eg ++ + + ++++r+++ + + +a++ + k+++ k +v + Cse_sc047563.1_g020.1 130 YMKYASKSGFVVRKSCQKRL-RSGIVKQKYLVCNREGCPNGIHVDtldlensDKQKRSSHLHITGDSDAQMLIAKMENRKKQVPN 213 99**********998887.8898*********998887788998867777777777888899***999988888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MDSIPNSSVS SDRSSSSQEI GATELSTTDS TTKSAPENVV VSITESATED IVVSDDVSAK 60 YTEEIVAYEH GDESATIKNL NALKTPESFS THSNFDTPGG MVYYIPKVPV DVLLAKGNVF 120 NSVDECISAY MKYASKSGFV VRKSCQKRLR SGIVKQKYLV CNREGCPNGI HVDTLDLENS 180 DKQKRSSHLH ITGDSDAQML IAKMENRKKQ VPNFLFDYLV ENAELSTIFW ADEVSKYKMM 240 FVPFTAIDNH RKCVTVAAGL LKNETANSYI WLLKAFIKAF GKAPSIVVTN QDGAMRKAIE 300 QEFARSKHRL CMWHITQKLF GKICSKIDDH TDFKRKFNQI VWNMYIGPDE FEYQWGNLLD 360 EFNLHNHKWL TKMFRIRSCW IPAFFVDSPL CGLMRTTSRS ESENSFFSHF TNSGSTLMNF 420 MNCFEMAMEK QRHIQEMLDH KSIDYVPTLR TYIKIERHAS KVYTRPFFEL VQAEIFAGTW 480 FCQIDTKSLV EGSEVSVIKE KKFVDELMEK KKAKKKEKSE KKGDDNDKNE EEEEPINLFH 540 REDGLYKNAN VEMIPDQYIL SRWTKNLIPA GLRNKRNMYG EKNEIVENYA NEATSIVDPC 600 VHMMSKDKTR LATLIEKLKL LKLDVEADCL NPPSKDKLDN LEDLVGVPKS PVVAVKNPSG 660 CKPKGREK

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MDSIPNSSVS SDRSSSSQEI GATELSTTDS TTKSAPENVV VSITESATED IVVSDDVSAK  60
YTEEIVAYEH GDESATIKNL NALKTPESFS THSNFDTPGG MVYYIPKVPV DVLLAKGNVF  120
NSVDECISAY MKYASKSGFV VRKSCQKRLR SGIVKQKYLV CNREGCPNGI HVDTLDLENS  180
DKQKRSSHLH ITGDSDAQML IAKMENRKKQ VPNFLFDYLV ENAELSTIFW ADEVSKYKMM  240
FVPFTAIDNH RKCVTVAAGL LKNETANSYI WLLKAFIKAF GKAPSIVVTN QDGAMRKAIE  300
QEFARSKHRL CMWHITQKLF GKICSKIDDH TDFKRKFNQI VWNMYIGPDE FEYQWGNLLD  360
EFNLHNHKWL TKMFRIRSCW IPAFFVDSPL CGLMRTTSRS ESENSFFSHF TNSGSTLMNF  420
MNCFEMAMEK QRHIQEMLDH KSIDYVPTLR TYIKIERHAS KVYTRPFFEL VQAEIFAGTW  480
FCQIDTKSLV EGSEVSVIKE KKFVDELMEK KKAKKKEKSE KKGDDNDKNE EEEEPINLFH  540
REDGLYKNAN VEMIPDQYIL SRWTKNLIPA GLRNKRNMYG EKNEIVENYA NEATSIVDPC  600
VHMMSKDKTR LATLIEKLKL LKLDVEADCL NPPSKDKLDN LEDLVGVPKS PVVAVKNPSG  660
CKPKGREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-41	FAR1 family protein