PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc045910.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LSD | ||||||||
Protein Properties | Length: 151aa MW: 16696.5 Da PI: 9.2557 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 32.6 | 1.4e-10 | 50 | 73 | 2 | 25 |
zf-LSD1 2 ggCrtlLsYPrGApsVRCalCdtV 25 +gCr+lL YP GA+sV+ alC++V Cse_sc045910.1_g010.1 50 SGCRNLLLYPVGATSVCYALCNAV 73 59*********************9 PP | |||||||
2 | zf-LSD1 | 25.5 | 2.1e-08 | 88 | 102 | 1 | 15 |
zf-LSD1 1 CggCrtlLsYPrGAp 15 CggC+tlL+Y rGA+ Cse_sc045910.1_g010.1 88 CGGCHTLLMYIRGAT 102 **************8 PP | |||||||
3 | zf-LSD1 | 32.7 | 1.2e-10 | 111 | 131 | 1 | 21 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCal 21 Cg+Cr lL+Y +GA++V+Ca+ Cse_sc045910.1_g010.1 111 CGNCRMLLMYQYGARYVKCAV 131 *******************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence |
MPEIPDIADN LEKLTGFTKY KYTKFWKSRQ MPADYPISMR KGSQSQLVWS GCRNLLLYPV 60 GATSVCYALC NAVTAVPPPG TEMAQLVCGG CHTLLMYIRG ATTNHVAHVN CGNCRMLLMY 120 QYGARYVKCA VFQFITSVGA STSATKQKFT T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-60 | LSD family protein |