PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc045462.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 347aa MW: 38507.6 Da PI: 4.8854

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc045462.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.7	3.6e-06	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 +C+ ++e + +C+++ +lC +C + H+ Cse_sc045462.1_g010.1 4 NCDYCGEARSMVYCRSDAAYLCLSCDRNVHSA 35 6***************************9954 PP
2	zf-B_box	26.7	1.2e-08	47	90	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++++++ C d + lC++C +H+g H++++ Cse_sc045462.1_g010.1 47 VCDNCNSQPALVRCVDEKASLCQNCDWVGHNGansdassHSRQT 90 8*****************************88888888888765 PP
3	CCT	56.2	1.2e-19	290	333	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+k RkFeK++rY++RKa+A+ R+RvKGrF k+ Cse_sc045462.1_g010.1 290 RSDAVLRYKEKKKMRKFEKRVRYATRKARADVRKRVKGRFIKAG 333 889*************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MGYNCDYCGE ARSMVYCRSD AAYLCLSCDR NVHSANPLSK RHMRTLVCDN CNSQPALVRC 60 VDEKASLCQN CDWVGHNGAN SDASSHSRQT LNCYSGCPSA VELSSIWSFM SDSCEQEMGS 120 MSIADNPDEP SDNNKIQDSS VELENNSKIS CSGTKEPEQM VDDGLYDDFT MDEVDMNIEN 180 YEELFGVGHN DPKHLFAKDG IDSLFGKRDG KKESANTVQP ECSNAASVDS LISCKTEPNP 240 CYARQQSNIS FSSLTGESSG GEYQDCGASS MVPMDEPPWS TPGPGSTTIR SDAVLRYKEK 300 KKMRKFEKRV RYATRKARAD VRKRVKGRFI KAGEAYDYDP MNEARSF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MGYNCDYCGE ARSMVYCRSD AAYLCLSCDR NVHSANPLSK RHMRTLVCDN CNSQPALVRC  60
VDEKASLCQN CDWVGHNGAN SDASSHSRQT LNCYSGCPSA VELSSIWSFM SDSCEQEMGS  120
MSIADNPDEP SDNNKIQDSS VELENNSKIS CSGTKEPEQM VDDGLYDDFT MDEVDMNIEN  180
YEELFGVGHN DPKHLFAKDG IDSLFGKRDG KKESANTVQP ECSNAASVDS LISCKTEPNP  240
CYARQQSNIS FSSLTGESSG GEYQDCGASS MVPMDEPPWS TPGPGSTTIR SDAVLRYKEK  300
KKMRKFEKRV RYATRKARAD VRKRVKGRFI KAGEAYDYDP MNEARSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-104	CO-like family protein