PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc043559.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 956aa MW: 106505 Da PI: 6.7082

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc043559.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.3e-40	144	221	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl+ ak+yhrrhkvC+ hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ Cse_sc043559.1_g020.1 144 VCQVDDCRADLTGAKDYHRRHKVCNSHSKATKALVGNVMQRFCQQCSRFHTLEEFDEGKRSCRRRLAGHNRRRRKTHP 221 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence
MEAKFGGNPH HYYGPVVPEL KAVGKRTMEW DLNDWKWDGD LFTATPLNGI QSDCRGSRQL 60 FPVSSGVEGV TFVSNSSSSC SDEEKRELEK RRRVVVLDDE DEVGGLNLNL GGRVYPIPED 120 ESERWEGKSG KKSKVGGGSS NRPVCQVDDC RADLTGAKDY HRRHKVCNSH SKATKALVGN 180 VMQRFCQQCS RFHTLEEFDE GKRSCRRRLA GHNRRRRKTH PENQTNGVSL NDERTSSYLL 240 VSLLRILSSA QCKPNGSEPN KDQDLLAHLL RNLASLAGTV TEKNSSGSQS LQDAGTSVAT 300 PEKDAMQPVR QTVNPSGSET MHRGTLQTAA PCQIAFPSNN KAPNEVGKMK LNNIDLNMVY 360 DDSQDCGFET PENIDNVPLW LRHPQKSSPP QTSGNSGSTA TQSPSSSSGE AQSRTDRIVF 420 KLFGKDPNEL PLVLRNQILD WLLNSPTEIE GYIRPGCIIL AVYLRMDESS WDELCYDLSS 480 HLRRLLDASS NSFWKTGWVY TRVLDHVAFA CDGQIVLSTA LPEKGYRNSS ILNISPIAVS 540 ASESTKFSVK GFNISWSTSR MLCVLEGNYL VQTSCSDLMA ATDSSIEHED IQCLTFSCSI 600 PKISGRGFIE IEDDSLSSSF FPFIVAEQDV CSEICMLESD LDITETFDDV EKEKKETEAR 660 TRALDFVNEM GWLLHRSQLK IKLTSMDPNS DLFSFKRFKW LIEFSVDHDW CAVVKKLLGI 720 IFSGTVEIAD HGSVEVALVE VGLLHRAVRR NSGPMVELLL NYHHENGLDG RRRESGLFRP 780 DAAGPGGLTP LHIASGKDGS ESVLDALTND PEMVGLQAWR NSRDSTGLTP YDYASLRGHY 840 NYIHLVQRKI NRKRSEMGHV VVDMPPAEQP RKVTFETEKT VVIRPVIFQK SCNQCERKLS 900 FYGGGRSSLA IYKPAMLSMV AIAAVCVCVA LLFKSSPQVM YVFQPFIWER LKYGAS

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence

MEAKFGGNPH HYYGPVVPEL KAVGKRTMEW DLNDWKWDGD LFTATPLNGI QSDCRGSRQL  60
FPVSSGVEGV TFVSNSSSSC SDEEKRELEK RRRVVVLDDE DEVGGLNLNL GGRVYPIPED  120
ESERWEGKSG KKSKVGGGSS NRPVCQVDDC RADLTGAKDY HRRHKVCNSH SKATKALVGN  180
VMQRFCQQCS RFHTLEEFDE GKRSCRRRLA GHNRRRRKTH PENQTNGVSL NDERTSSYLL  240
VSLLRILSSA QCKPNGSEPN KDQDLLAHLL RNLASLAGTV TEKNSSGSQS LQDAGTSVAT  300
PEKDAMQPVR QTVNPSGSET MHRGTLQTAA PCQIAFPSNN KAPNEVGKMK LNNIDLNMVY  360
DDSQDCGFET PENIDNVPLW LRHPQKSSPP QTSGNSGSTA TQSPSSSSGE AQSRTDRIVF  420
KLFGKDPNEL PLVLRNQILD WLLNSPTEIE GYIRPGCIIL AVYLRMDESS WDELCYDLSS  480
HLRRLLDASS NSFWKTGWVY TRVLDHVAFA CDGQIVLSTA LPEKGYRNSS ILNISPIAVS  540
ASESTKFSVK GFNISWSTSR MLCVLEGNYL VQTSCSDLMA ATDSSIEHED IQCLTFSCSI  600
PKISGRGFIE IEDDSLSSSF FPFIVAEQDV CSEICMLESD LDITETFDDV EKEKKETEAR  660
TRALDFVNEM GWLLHRSQLK IKLTSMDPNS DLFSFKRFKW LIEFSVDHDW CAVVKKLLGI  720
IFSGTVEIAD HGSVEVALVE VGLLHRAVRR NSGPMVELLL NYHHENGLDG RRRESGLFRP  780
DAAGPGGLTP LHIASGKDGS ESVLDALTND PEMVGLQAWR NSRDSTGLTP YDYASLRGHY  840
NYIHLVQRKI NRKRSEMGHV VVDMPPAEQP RKVTFETEKT VVIRPVIFQK SCNQCERKLS  900
FYGGGRSSLA IYKPAMLSMV AIAAVCVCVA LLFKSSPQVM YVFQPFIWER LKYGAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein