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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc042182.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30028.6 Da PI: 7.5819 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l+ +v +G g+W++++ g+ R +k+c++rw +yl Cse_sc042182.1_g010.1 15 KGLWSPDEDQKLKYYVMNYGHGCWSSVPINAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.2e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +Ede + ++++lG++ W+ a++++ gRt++++k++w+++l Cse_sc042182.1_g010.1 68 RGEFSLQEDETISSLHRLLGNR-WSQMAQHLP-GRTDNEIKNYWNSHL 113 899*******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence |
MRCKASEKPC PKHKKGLWSP DEDQKLKYYV MNYGHGCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGE FSLQEDETIS SLHRLLGNRW SQMAQHLPGR TDNEIKNYWN SHLKKRIEKL 120 QHLQTNPKTD YISTNMRSTE PSSSCPNAAS FMNSSSSDMN QLVPPASQIA TLPKILFADW 180 ISLDEFQKDL GKSSDQPFSP GSNYVVSHIH DYHEVSTQEN KDSQNCLISR SNNGDMFQSH 240 MTIDEISSFS DGDFNLDDFI YI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 4e-59 | MYB family protein |