PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc042113.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 385aa MW: 43305.3 Da PI: 6.415

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc042113.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	226	273	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P++ +k Ka +L + ++Y++sLq Cse_sc042113.1_g030.1 226 SHSLAERVRREKISERMKLLQNLVPNC----NKVTGKALMLDEIINYVQSLQ 273 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MDRHFFLNNG MHSYSQFDSV LSSPVSNSTI SNDIVKENFP RIHNSMSLSP NLPLMADDPG 60 FAERAAKFSC FGSRSFNSRS DQFGLNSNKG EFPFGSINNV SPVAKFPRVS SVPMLKTDTS 120 PVGFEEKMNL DEANMKLSRF DGSAANSNEE SSVSEQIPVK KDFSSRKRKV ASNAKKEVEA 180 NDDSNSKRLK KPEQENCGKT EENSKLPEAP KDYIHVRARR GQATDSHSLA ERVRREKISE 240 RMKLLQNLVP NCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLATVNPSL DFDTNDLLSQ 300 NVNQQNTNLL QPSTFYQQNT QGLYNGSAPM TQPVHEFVEP FPQFSGFSQD DLQSIVRMGF 360 GENLDLDNSF FQTTHDQPSN MKIEL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MDRHFFLNNG MHSYSQFDSV LSSPVSNSTI SNDIVKENFP RIHNSMSLSP NLPLMADDPG  60
FAERAAKFSC FGSRSFNSRS DQFGLNSNKG EFPFGSINNV SPVAKFPRVS SVPMLKTDTS  120
PVGFEEKMNL DEANMKLSRF DGSAANSNEE SSVSEQIPVK KDFSSRKRKV ASNAKKEVEA  180
NDDSNSKRLK KPEQENCGKT EENSKLPEAP KDYIHVRARR GQATDSHSLA ERVRREKISE  240
RMKLLQNLVP NCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLATVNPSL DFDTNDLLSQ  300
NVNQQNTNLL QPSTFYQQNT QGLYNGSAPM TQPVHEFVEP FPQFSGFSQD DLQSIVRMGF  360
GENLDLDNSF FQTTHDQPSN MKIEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	190	RKRKVASNAKKEVEANDDSNSKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-72	bHLH family protein