PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc041617.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 399aa    MW: 45059.2 Da    PI: 5.9492
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc041617.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.62e-1866146290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                             Y++YA e+GF vr+ ++++    g +++++f Cskeg+++ ++ k     r r+e rt+Cka++ v ++  +k++v+++ +eHnH +
  Cse_sc041617.1_g020.1  66 AYKDYAAEAGFIVRRGHQTND--GGIVMNKEFLCSKEGTKKVKSVK-----RIRSEFRTNCKARIYVVRS-GEKYRVKHFAEEHNHGF 145
                            5***************98877..999*************9998777.....9999************999.9**************98 PP

                   FAR1  90 a 90 
                            +
  Cse_sc041617.1_g020.1 146 F 146
                            6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    
MRQNCASNEF VEDENLSADV NVEENEKVNS PDFFTSTSIL IKPVVVKTLV PVEGTLFDSV  60
EEAYKAYKDY AAEAGFIVRR GHQTNDGGIV MNKEFLCSKE GTKKVKSVKR IRSEFRTNCK  120
ARIYVVRSGE KYRVKHFAEE HNHGFFTAED RHLQKSHRSM SLAHQYFAIK ASNLNIGPCM  180
SFNFIAELLG GYENVGATKI DFKNMSRDIY SYIVILIKQV DNGSIDFRLT MVRIISAFQV  240
NNGSPNSTTI GDQYCLLKEE ISSLKQQLHD SSSKETEVKQ ELVLLQEKLN LNTLSEEWNL  300
LTNEIEEVLT TGHEELEDAP YFLDDVTGHH SPVIEVYAYA ATHVKKAIER FLATMLAIQG  360
ALIVASSVWI IIRFFSPVGM VSVITFAGFD LFDKGFNVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-11FAR1 family protein