PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc040226.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 446aa MW: 50284.6 Da PI: 9.3193

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc040226.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.6e-15	289	331	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a+ +G++ W+ I++ ++ gRt++ +k++w++ Cse_sc040226.1_g010.1 289 PFTPHEDDVILRAHLIHGNK-WSVISKLLP-GRTDNAIKNHWNST 331 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MAQSDNTMSL LSAAFKDMIG RDKLTGPNFN DWHRSLRIIL RVAKRVEILT TPLPNAPLDT 60 ATALEQEAYR VEYEKHNDVA CLMLSGMSAQ LQKQFEYYPP MSMLDELKRM FEKPPAAELY 120 ELIEKVHSCR QEVGKSVSDH VLEMKHHLDQ LEKLGCGYSN DVCVGLINHS LNQERFGDFF 180 RNFHMHCTGK TVNELHAMLV DYEKRLPNKA PTPVVLAIQG GRLNNPKPQA DKKGKGKGKG 240 KQVVIPPAPK KNPGKKKENP KKDFIPGRSG KSCRLRWCNQ LSPNVQHRPF TPHEDDVILR 300 AHLIHGNKWS VISKLLPGRT DNAIKNHWNS TLRRRGLPLT RSSSESESTQ SDDNDDEGLG 360 FKKNKRRCVS VSDVSSCDGM TVLTLLPPGN EKKGDKVEKG TDEIEDTCLV DVMRKMIAKE 420 VRSYIDELRA NDGLSFGPVL SKRVSE

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MAQSDNTMSL LSAAFKDMIG RDKLTGPNFN DWHRSLRIIL RVAKRVEILT TPLPNAPLDT  60
ATALEQEAYR VEYEKHNDVA CLMLSGMSAQ LQKQFEYYPP MSMLDELKRM FEKPPAAELY  120
ELIEKVHSCR QEVGKSVSDH VLEMKHHLDQ LEKLGCGYSN DVCVGLINHS LNQERFGDFF  180
RNFHMHCTGK TVNELHAMLV DYEKRLPNKA PTPVVLAIQG GRLNNPKPQA DKKGKGKGKG  240
KQVVIPPAPK KNPGKKKENP KKDFIPGRSG KSCRLRWCNQ LSPNVQHRPF TPHEDDVILR  300
AHLIHGNKWS VISKLLPGRT DNAIKNHWNS TLRRRGLPLT RSSSESESTQ SDDNDDEGLG  360
FKKNKRRCVS VSDVSSCDGM TVLTLLPPGN EKKGDKVEKG TDEIEDTCLV DVMRKMIAKE  420
VRSYIDELRA NDGLSFGPVL SKRVSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	396	KKNKRRCVSVSDVSSCDGMTVLTLLPPGNEKKGDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	2e-33	MYB family protein