PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc039950.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 244aa    MW: 27249.6 Da    PI: 8.1426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc039950.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181661147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+WT+eEd +l+++v+ +G ++W+ I + ++ gR++k+c++rw + 
  Cse_sc039950.1_g020.1 16 KGSWTQEEDAKLIQLVETHGARNWSVIGSSIP-GRSGKSCRLRWCNQ 61
                           799*****************************.***********985 PP
2Myb_DNA-binding48.61.9e-1570112347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+ Ed+ +++a+  +G++ W+ I++ ++ gRt++ +k++w++ 
  Cse_sc039950.1_g020.1  70 PFTPHEDDVILRAHLIHGNK-WSVISKLLP-GRTDNAIKNHWNST 112
                            89******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MTSSSSNDDV NLLNKKGSWT QEEDAKLIQL VETHGARNWS VIGSSIPGRS GKSCRLRWCN  60
QLSPNVQHRP FTPHEDDVIL RAHLIHGNKW SVISKLLPGR TDNAIKNHWN STLRRRGLTR  120
SSESESTQSD DECLKNKRRC VSVSDVSSYD GMTNKRRCVS VSDVSSYDGM TVLTLLPPRD  180
EGEKKNGGVD DEVEKGAAEI DHTCLVDVMR KMIAKEVRSY IDELRAKDGL SFGAVLRPVA  240
QQSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-46MYB family protein