PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc039116.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 269aa    MW: 31537.4 Da    PI: 5.1917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc039116.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-142976148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+ +Ed++l+ +++++G  +W+  +r  g+ R++k+c++rw +yl
  Cse_sc039116.1_g030.1 29 KGAWSVDEDQKLITYINRYGIWNWSQMPRFAGLSRSGKSCRLRWMNYL 76
                           79******************99************************97 PP
2Myb_DNA-binding52.51.1e-1682127148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g++++eE+e ++  + qlG++ W++Ia++++ gR+++++k++w+++l
  Cse_sc039116.1_g030.1  82 KGNFSEEEEETILVSHSQLGNR-WSAIASRLP-GRSDNDVKNHWHSHL 127
                            79********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MSTDRKKGAW SVDEDQKLIT YINRYDRKKG AWSVDEDQKL ITYINRYGIW NWSQMPRFAG  60
LSRSGKSCRL RWMNYLRPNV KKGNFSEEEE ETILVSHSQL GNRWSAIASR LPGRSDNDVK  120
NHWHSHLKKR ASEQYLVCGT TKENDVNLLP IFETENIEDT QQPANHIDDF FESHFSFEEH  180
NFTSSCSTTT KDQQFEHISD YHDTGSPGTI DDLRYFWDQL CPLENLEHIN NQMDHVTSAH  240
AFEDSNNYLG SYDSFYNNDY NSSIFDCPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-47MYB family protein