PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc038885.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 318aa MW: 36183.8 Da PI: 10.1289

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc038885.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	4e-18	88	138	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++y+GV+++k +g+W A+I+d s ++k+ +lg+++taeeAa a+++a+ +l+ Cse_sc038885.1_g010.1 88 KKYRGVTRRKVSGKWIAQICDTS---QKKTLWLGTYDTAEEAAVAYDEAATALR 138 59*****************42...35********************9887 PP
2	AP2	48.8	1.7e-15	153	198	5	54
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 GV+ ++ g+W+A I+dp + +krf+lg+++taeeA +++a+++l Cse_sc038885.1_g010.1 153 GVSKRP-YGKWAAKIWDPLQ---KKRFWLGTYDTAEEATVVYDEAALRLD 198 9***.7*****743...5*********************985 PP
3	AP2	48.8	1.8e-15	216	267	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ g+WvA+I+dp + rk++ lg+++tae+A a+++a+ +l+g Cse_sc038885.1_g010.1 216 KKYLGVRRNSHGGKWVARIWDPLQ---RKSILLGTYDTAEQAVVAYDEAAVRLNG 267 5899***************844...5*********************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MEKTIKFSEH VLRENKFIQE DPPGKPCSKT SSLKPKTIRI TVTDPYATDS SSSSDDENNK 60 SVKRVKKHVT EIKLKRKRKR RSTSTSVKKY RGVTRRKVSG KWIAQICDTS QKKTLWLGTY 120 DTAEEAAVAY DEAATALRLE GRTHAVTSST RDGVSKRPYG KWAAKIWDPL QKKRFWLGTY 180 DTAEEATVVY DEAALRLDAL RLQGTRAITT TSTREKKYLG VRRNSHGGKW VARIWDPLQR 240 KSILLGTYDT AEQAVVAYDE AAVRLNGSHA VTNFGVSPHG FAQVDDEFGF GFDLPEFRRY 300 RVDEFSEFDV DDFLIDVR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	KRKRKRR
2	75	101	KRKRKRRSTSTSVKKYRGVTRRKVSGK
3	76	81	RKRKRR
4	77	103	KRKRKRRSTSTSVKKYRGVTRRKVSGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23750.1	3e-17	ERF family protein