PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc036880.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 707aa MW: 82095.8 Da PI: 9.2334

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc036880.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.2	6.3e-19	11	105	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeit..krtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 ++Y++YAk+vGF+vr +++ sk+n+e + + fvCskeg++ k +++++r+ +++rt+Cka ++v+ + + +++++ Cse_sc036880.1_g020.1 11 QYYKDYAKRVGFEVRLGQQYISKKNKEKIldLKYFVCSKEGTNPAPKAGalkKKSNSRKVSSKRTDCKAVFRVRHVLGKGYWCYDFVE 98 69****************997776544224789***99888777767778888899***********999999* PP FAR1 84 eHnHela 90 HnH+l+ Cse_sc036880.1_g020.1 99 GHNHSLV 105 ***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MMYHSLEQAY QYYKDYAKRV GFEVRLGQQY ISKKNKEKIL DLKYFVCSKE GTNPAPKAGA 60 LKKKSNSRKV SSKRTDCKAV FRVRHVLGKG YWCYDFVEGH NHSLVSEEDS VFLVSSHEVT 120 YTQQVFLYQA SQVNLGPVKG FNLLRQIYGD YDFIGASLVD CKNYRRDVLD FIGKNDAQML 180 VEMLMNKKDF LPNFSFEYQT GDNNALTNLF WADEYAKRNY YAFGDVMSFD ATFRTNKYKM 240 VFVPFTGIDN HNHCVTFGDA LLSSEMKESY IWLLECFKRA FVRAPKVIVT DQDGSMKVAI 300 ESVFPLSRHR LCMWHIMQKL TSKVGPVLAK DLTFKRRISD IVWTDRIEPE EFEDLWERLL 360 VDFDLKGHKW LSDMYNLRQK WIPAYYRDEL MSGLMRTSSR SESENNAYGR LASIDLTLWE 420 FYNHFDSVVG CQRFSQRKND HDSRYTIPEM HTELDLEKEA SEIYTRSIFF DVQTKIYASV 480 ISCMSVSVSA DDSGKKYVIQ DTSEDERISR RHRQVEGVVN EVFYEVLCKP AEDFYQCSCK 540 RFESYGLLCR HIFYVLRLSK VKKFPKKYVL RRWSKDSLSP ASVIQATGDS PDMILREIFR 600 AIEYCADADV PIPKKTNKRD RLASILGVSQ PVETIVNVPK QVSTKGSRKR IKSSLERSVN 660 PSGKSRKNCR YCKCSMKDHD QAKCNAIRAE IATKKASDKA ANNNNSK

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MMYHSLEQAY QYYKDYAKRV GFEVRLGQQY ISKKNKEKIL DLKYFVCSKE GTNPAPKAGA  60
LKKKSNSRKV SSKRTDCKAV FRVRHVLGKG YWCYDFVEGH NHSLVSEEDS VFLVSSHEVT  120
YTQQVFLYQA SQVNLGPVKG FNLLRQIYGD YDFIGASLVD CKNYRRDVLD FIGKNDAQML  180
VEMLMNKKDF LPNFSFEYQT GDNNALTNLF WADEYAKRNY YAFGDVMSFD ATFRTNKYKM  240
VFVPFTGIDN HNHCVTFGDA LLSSEMKESY IWLLECFKRA FVRAPKVIVT DQDGSMKVAI  300
ESVFPLSRHR LCMWHIMQKL TSKVGPVLAK DLTFKRRISD IVWTDRIEPE EFEDLWERLL  360
VDFDLKGHKW LSDMYNLRQK WIPAYYRDEL MSGLMRTSSR SESENNAYGR LASIDLTLWE  420
FYNHFDSVVG CQRFSQRKND HDSRYTIPEM HTELDLEKEA SEIYTRSIFF DVQTKIYASV  480
ISCMSVSVSA DDSGKKYVIQ DTSEDERISR RHRQVEGVVN EVFYEVLCKP AEDFYQCSCK  540
RFESYGLLCR HIFYVLRLSK VKKFPKKYVL RRWSKDSLSP ASVIQATGDS PDMILREIFR  600
AIEYCADADV PIPKKTNKRD RLASILGVSQ PVETIVNVPK QVSTKGSRKR IKSSLERSVN  660
PSGKSRKNCR YCKCSMKDHD QAKCNAIRAE IATKKASDKA ANNNNSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	613	619	PKKTNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-84	FAR1 family protein