PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc036615.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 343aa MW: 38273.6 Da PI: 5.0051

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc036615.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48.8	1.2e-15	268	292	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd+C+FaHg Cse_sc036615.1_g010.1 268 KTELCNKWQETGACPYGDNCHFAHG 292 9***********************8 PP
2	zf-CCCH	21.1	5.5e-07	305	330	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ Cse_sc036615.1_g010.1 305 YKTEVCRMVLAGDICPYGHRCHFRHS 330 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MSTEKKEISS SEMINSGDDN DINDTNLIGD IFLSDEFDYS SGELFNPNNN NINNNSSIFP 60 PKFITQSQLS YSSPSDCSFD DDSTLISANA MATENRLSQA SFILEYQQLY NCYTMCLTTL 120 QDSVKEAEAL RVENEALRVA NGELLNRLSL FSNSTRVTSS FGRSLSSASL IGEFSRLGIG 180 SAFCESNGEE FPSVSPTSVI EPNQFVRGDQ RVSMPKSISV RSKGYLKSVA TPQRQIRQQN 240 TNQRVRVAGE KKAGEGMEFE VYNQGMSKTE LCNKWQETGA CPYGDNCHFA HGISELRPVI 300 RHPRYKTEVC RMVLAGDICP YGHRCHFRHS LTDEELLMGV NRS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MSTEKKEISS SEMINSGDDN DINDTNLIGD IFLSDEFDYS SGELFNPNNN NINNNSSIFP  60
PKFITQSQLS YSSPSDCSFD DDSTLISANA MATENRLSQA SFILEYQQLY NCYTMCLTTL  120
QDSVKEAEAL RVENEALRVA NGELLNRLSL FSNSTRVTSS FGRSLSSASL IGEFSRLGIG  180
SAFCESNGEE FPSVSPTSVI EPNQFVRGDQ RVSMPKSISV RSKGYLKSVA TPQRQIRQQN  240
TNQRVRVAGE KKAGEGMEFE VYNQGMSKTE LCNKWQETGA CPYGDNCHFA HGISELRPVI  300
RHPRYKTEVC RMVLAGDICP YGHRCHFRHS LTDEELLMGV NRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-65	C3H family protein