PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc036534.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 584aa MW: 68059.6 Da PI: 9.355

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc036534.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	3e-22	13	102	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 +f+ +Y+ ++GF+vrk+ +ksk +g+ t+++fvC+keg r+e+ ++ ++++ +raetrt+C+ ++ + +k ++k++++++e +HnH Cse_sc036534.1_g010.1 13 QFWINYGAHIGFDVRKQWINKSKIDGHLTSARFVCNKEGIRKEDIRD-TRTKCPRAETRTNCESRMGIAYDKqTNKYKLHDFEPKHNH 99 699****************************************99.9****************9999************* PP FAR1 88 ela 90 l Cse_sc036534.1_g010.1 100 MLH 102 996 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MGMEFDTVEN AWQFWINYGA HIGFDVRKQW INKSKIDGHL TSARFVCNKE GIRKEDIRDT 60 RTKCPRAETR TNCESRMGIA YDKQTNKYKL HDFEPKHNHM LHTPETVHMM SSQRKISDVQ 120 AIEIDLADDS GIKAKASYEL MSRHGGGKSS NAIKNVGNIM KDNSSLLKDF KRCMYEYENE 180 HKFEEAWKAM CDYYKVQENP WLKAIYKKKE KWAKCYMKLV YTLGMRSTQL SESLNGDLKI 240 YLKSDLDILQ FFKNFERVVE DKRYNELKAE FDSRKKLPRV RMHRSPLLRQ VAEIYTPSVF 300 ELFQDEFDWS LSAMIKEHLE NQQVHTYVVS MFNQDGEYKV TSNPSEKTIF CSCKKFETFG 360 ILCSHCLKVF DAMDIKILPQ QYILKRWTRE AKNDIVQDVK GKVFHEDANL SATQRYRSLC 420 SKLVKLASKA SEYEETYEFT ATSIDELCKK VQSMYVNLNK LNSEDVGVGT SKDKDTRENI 480 EPPTNVSLKK KVGQKGRKRR AKSWVEQQPK SKKVATKDKV IPSQQNNKDE LHSIADVLFD 540 KFKDFLNCHP QVSTNNNPMI FDQRIGHNSS FKSSQASSSI YNSV

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MGMEFDTVEN AWQFWINYGA HIGFDVRKQW INKSKIDGHL TSARFVCNKE GIRKEDIRDT  60
RTKCPRAETR TNCESRMGIA YDKQTNKYKL HDFEPKHNHM LHTPETVHMM SSQRKISDVQ  120
AIEIDLADDS GIKAKASYEL MSRHGGGKSS NAIKNVGNIM KDNSSLLKDF KRCMYEYENE  180
HKFEEAWKAM CDYYKVQENP WLKAIYKKKE KWAKCYMKLV YTLGMRSTQL SESLNGDLKI  240
YLKSDLDILQ FFKNFERVVE DKRYNELKAE FDSRKKLPRV RMHRSPLLRQ VAEIYTPSVF  300
ELFQDEFDWS LSAMIKEHLE NQQVHTYVVS MFNQDGEYKV TSNPSEKTIF CSCKKFETFG  360
ILCSHCLKVF DAMDIKILPQ QYILKRWTRE AKNDIVQDVK GKVFHEDANL SATQRYRSLC  420
SKLVKLASKA SEYEETYEFT ATSIDELCKK VQSMYVNLNK LNSEDVGVGT SKDKDTRENI  480
EPPTNVSLKK KVGQKGRKRR AKSWVEQQPK SKKVATKDKV IPSQQNNKDE LHSIADVLFD  540
KFKDFLNCHP QVSTNNNPMI FDQRIGHNSS FKSSQASSSI YNSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-33	FAR1 family protein