PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc036325.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 517aa    MW: 57593.4 Da    PI: 8.8476
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc036325.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.76.6e-07101220190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................................tekerr 53 
                            +fY +Y+k+ GF+++  ++++ + ++ + k       +g r +++k+                                    +k+ r
  Cse_sc036325.1_g020.1 101 NFYIHYSKMGGFDIKLGTESNPNGSD-CPKVGR----KGIRYDRHKSdsevdvrgrangksvdgaidnkgkgidlslvgdsfVKKTFR 183
                            69*************99987773332.333333....333333333344557889999999*******************99999999 PP

                   FAR1  54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                            ++++ +tgC a+l+v k+     + + +++eHnH+l+
  Cse_sc036325.1_g020.1 184 KNTSCKTGCLAQLRVMKSMGVCMKSMFFVEEHNHPLV 220
                            ******************999999999********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MITSPNSVGE TSSCSYVYGS SSSSSSAVVR ISSSCSVSDV SSSSFVRVSS SSSVSNVSTV  60
IDRSIGVSSV IDGSRVWVPD VDMSLKPTKG IVFVSLVQAY NFYIHYSKMG GFDIKLGTES  120
NPNGSDCPKV GRKGIRYDRH KSDSEVDVRG RANGKSVDGA IDNKGKGIDL SLVGDSFVKK  180
TFRKNTSCKT GCLAQLRVMK SMGVCMKSMF FVEEHNHPLV SQQDMQFLMS SRNMGCSKQH  240
FVMQVANSNV GHVRAFRLMK EIYGGFENIG ATVVDCKKFK RDMNNFIGDR DAQMVVEKLE  300
NLEKHCEGFF VDYYKGEGDS LAALFWADSC AKMNYRRFSD VISFDAIFRS NRYRIVFMPF  360
TGIDNHNRSV GSSVCNNTDF RKRLCVVVWN DQISPSIFEE EWKSIIAEFG LSENKWLSDI  420
YDMRSRWIPA FLCNEDLSGL MRTTSRSKSE NLFFGRWTNA NLTLVEFISH FDSAMDSQRS  480
VVSKALVKDA KKGQEEGISE RCQTSVSKAL VKGCKKG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-26FAR1 family protein