PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc036011.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 376aa MW: 42209.9 Da PI: 5.9032

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc036011.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.7	6.5e-10	53	99	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ + C+ + lC +C +H+ H++vp+ Cse_sc036011.1_g020.1 53 RVWVCEACEQAPAAFICKADAASLCTTCDAVIHSAnplarrHQRVPV 99 5689****************************6689999999986 PP
2	CCT	67.3	4.2e-23	307	350	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF k++ Cse_sc036011.1_g020.1 307 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFSKRT 350 9***************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MLKEEICTTR GRVCDTCCCS PSTIFCEADL AYLCTRCDSQ VHAANKLSSR HKRVWVCEAC 60 EQAPAAFICK ADAASLCTTC DAVIHSANPL ARRHQRVPVM PISGSTYESQ GRFFPQGSDG 120 TVNKEEEDEA ASWLLFDTPA KNNQNQEYTN EFLFNGEGGV DEYLDLVDYN SCQDTQFSDD 180 HKCNDLQFDD DYKYTNDVTN YSKDMRKYGR GDADSVVPVG GGEAKKEHQI YDLNFQHQKF 240 QLGCDYEASN GGYSYPASRG HSVSMSSLDV GVVPESSISN SRSSKGTTDL FSGTSIQMPT 300 QLTPLDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP RIKGRFSKRT NVDVEVDQMF 360 STTLMTEGGY CIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MLKEEICTTR GRVCDTCCCS PSTIFCEADL AYLCTRCDSQ VHAANKLSSR HKRVWVCEAC  60
EQAPAAFICK ADAASLCTTC DAVIHSANPL ARRHQRVPVM PISGSTYESQ GRFFPQGSDG  120
TVNKEEEDEA ASWLLFDTPA KNNQNQEYTN EFLFNGEGGV DEYLDLVDYN SCQDTQFSDD  180
HKCNDLQFDD DYKYTNDVTN YSKDMRKYGR GDADSVVPVG GGEAKKEHQI YDLNFQHQKF  240
QLGCDYEASN GGYSYPASRG HSVSMSSLDV GVVPESSISN SRSSKGTTDL FSGTSIQMPT  300
QLTPLDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP RIKGRFSKRT NVDVEVDQMF  360
STTLMTEGGY CIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-108	CO-like family protein