PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc034912.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 451aa MW: 50202.7 Da PI: 6.238

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc034912.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	1.9e-07	35	77	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+e+++l+ a + + + +W++Ia++++ g+t++++ ++ Cse_sc034912.1_g020.1 35 WTKEDELLFQSALVMVPADmegRWEKIAERVP-GKTAEDVLAYY 77 ******************************.***997776 PP
2	Myb_DNA-binding	45.9	1.3e-14	142	186	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ +++++ ++G+g+W++I+r +Rt+ q+ s+ qky Cse_sc034912.1_g020.1 142 PWSEEEHRRFLEGLDKYGKGDWRSISRNSVVTRTPTQVASHAQKY 186 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MYDQDQELIN DESTHTWSND DLLLLQSALM MDDMWTKEDE LLFQSALVMV PADMEGRWEK 60 IAERVPGKTA EDVLAYYEAL VCDVTEIESG RVDLPSYVDD DEDEVEENLV VKKKRGRKPM 120 GSLNGDHSRT SQNNEKRKKG TPWSEEEHRR FLEGLDKYGK GDWRSISRNS VVTRTPTQVA 180 SHAQKYFQRQ TSRTKERKRS SIHDITINNT SMMVQPSPQP QPPPTPSPSP PPTNFYGGVE 240 QPSTKQPNSF HGTTLVLQPP PQLTPSPPTT NLYGGMQQPS TPQAASFHGS IMVAQAPPQP 300 TPSRASNNFY GVTHQQPSQP PLSFNGSTMV LQPHPLATPS LPLTNFYGYV QQPSTPQPTH 360 FYGGMQQPPT SPSKKFNCEV PTLLPPPTNS YHGVQQGLQT PSSPPTNIRN CTQQPPTPAS 420 TYINGGQGGA PPQQQQQQMG YEHQQNFGNP Y

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MYDQDQELIN DESTHTWSND DLLLLQSALM MDDMWTKEDE LLFQSALVMV PADMEGRWEK  60
IAERVPGKTA EDVLAYYEAL VCDVTEIESG RVDLPSYVDD DEDEVEENLV VKKKRGRKPM  120
GSLNGDHSRT SQNNEKRKKG TPWSEEEHRR FLEGLDKYGK GDWRSISRNS VVTRTPTQVA  180
SHAQKYFQRQ TSRTKERKRS SIHDITINNT SMMVQPSPQP QPPPTPSPSP PPTNFYGGVE  240
QPSTKQPNSF HGTTLVLQPP PQLTPSPPTT NLYGGMQQPS TPQAASFHGS IMVAQAPPQP  300
TPSRASNNFY GVTHQQPSQP PLSFNGSTMV LQPHPLATPS LPLTNFYGYV QQPSTPQPTH  360
FYGGMQQPPT SPSKKFNCEV PTLLPPPTNS YHGVQQGLQT PSSPPTNIRN CTQQPPTPAS  420
TYINGGQGGA PPQQQQQQMG YEHQQNFGNP Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	138	KKKRGRKPMGSLNGDHSRTSQNNEKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	7e-55	MYB family protein