PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc034841.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 439aa MW: 51161.2 Da PI: 9.8262

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc034841.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.5	6.6e-16	51	144	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 Y +YA++vGF vrks +k+ r+g ++++ +vC++eg ++ + + ++k++++ + + tgCka+++ ++ + k++++ + + Cse_sc034841.1_g010.1 51 YMKYASKVGFMVRKSCQKRL-RSGIVKQKFLVCNREGCPKGIHVDtldlenSDKQKKSLNLHITGCKARVMFELIPgSTKYKLIVFYS 137 99**********998887.8888*********999888889998888888899999**********9******* PP FAR1 84 eHnHela 90 HnHel Cse_sc034841.1_g010.1 138 IHNHELE 144 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
LNALKTPESF STHSNFDTPG GTVYYIPKFP VDVLLAKGNV FNSVDECISA YMKYASKVGF 60 MVRKSCQKRL RSGIVKQKFL VCNREGCPKG IHVDTLDLEN SDKQKKSLNL HITGCKARVM 120 FELIPGSTKY KLIVFYSIHN HELERKEYKH LSKTERQLTY AEQLFIVKAA SVNIGATRAH 180 HLLTGLKGSY LLVHGTTVDF KNFFRSVNCY IGDSDAQMLI AKMENRQKHV PDFSFDYLIC 240 SKIYDHTDFK RKFNQIVWNM YIGPDEFEYQ WGKLLDEFNL HNHKWLTKMF RIRSCWIPAF 300 FVDSPLCGLM RTTSRSKSEN SFFSHFTNSG STLMNFMNCF ETAMEKQRHI QERLDHKSID 360 YVPTLRTYLK IERHASKVYT RPLFELVQAE IFAGTWFCQI DTKSLVEGSE VSVIKEKTFV 420 DELMEKKKAK KKEKFKKKR

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

LNALKTPESF STHSNFDTPG GTVYYIPKFP VDVLLAKGNV FNSVDECISA YMKYASKVGF  60
MVRKSCQKRL RSGIVKQKFL VCNREGCPKG IHVDTLDLEN SDKQKKSLNL HITGCKARVM  120
FELIPGSTKY KLIVFYSIHN HELERKEYKH LSKTERQLTY AEQLFIVKAA SVNIGATRAH  180
HLLTGLKGSY LLVHGTTVDF KNFFRSVNCY IGDSDAQMLI AKMENRQKHV PDFSFDYLIC  240
SKIYDHTDFK RKFNQIVWNM YIGPDEFEYQ WGKLLDEFNL HNHKWLTKMF RIRSCWIPAF  300
FVDSPLCGLM RTTSRSKSEN SFFSHFTNSG STLMNFMNCF ETAMEKQRHI QERLDHKSID  360
YVPTLRTYLK IERHASKVYT RPLFELVQAE IFAGTWFCQI DTKSLVEGSE VSVIKEKTFV  420
DELMEKKKAK KKEKFKKKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	426	439	KKKAKKKEKFKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-20	FAR1 family protein