PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc034694.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 391aa    MW: 43146.9 Da    PI: 10.0874
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc034694.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.1e-09350372527
                            --SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                             C++++rtG C +G+rC F+H++
  Cse_sc034694.1_g010.1 350 DCSHYLRTGRCVFGSRCWFNHPR 372
                            6********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MGSRKFLRLT RRISFAIAKG VGAQIVSRLP TNFLHRVLLA LRFFLEIFMG ITLFRVREVD  60
IGLFGDGDRS LRPADILLYS WDSGRDVCVD LTGSSPLTQS GLIDFIPGRA ISDAAQQLEK  120
DAVTLLKRIR RFSMTQDIGA RAAVHIFNRI GFTIARGVGA QLVSRLPTNL LVFTGDIYGD  180
HVVSCAGIVG IKHRHNIVRD VLVYICSRSG ISARKEVDIG LYGDRDRSLR PADILLYSWD  240
GGLDVCVDLT GSSPLTQSEL EKDAVTLLKR IRRFSMTQDI GARAAVHIFN RIGFAIARGV  300
GAQLAFKPIT SLKGVIKMSV LVTESRVEVG LEGEGENEKA VYPERPNEGD CSHYLRTGRC  360
VFGSRCWFNH PRDRAGSIVG AMSGRHGKYP E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.14e-14C3H family protein