PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc034077.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 959aa MW: 108751 Da PI: 5.0564

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc034077.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.6e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Cse_sc034077.1_g010.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Cse_sc034077.1_g010.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR KRKRKGIDYN AEIPFEKRPP PGFYDVTDES SIVEQPKFPT 240 TIEELEGERR ADKEARLRKQ DVARNKIAQR QDAPSAILQA NKMNDPETVR KRPKMNLPTP 300 QIPDYELEHI AKFGLPALSE ELSEGSGATR ALLADYTQTP RHGMTPLRTP QRTPAGKQDA 360 IMMEAENQAR LRLSQTPLLG GENPDLHPSD FSGVTPKKNE IQTPNHMLTP SVMSTPGASG 420 LTGLTPRIGM TPRDGQSFGV TPKGTPIRDE LHINEEMEMR DSAKLERARQ ADMRRNLRSG 480 LTGLPQPKNE YLITVQPVPE DDEEPEEKME EDMSDRIARE KAEEEARLQA LLKKRSKVLQ 540 RELPRPPIGS LDLIKKSLIK ADEDKSSFAP PTLIEQADEM IRKELLSLLE HDNAKYPLDE 600 KLEKEKKKGN KRGKSLQVPV IDEFDEDELK EADQLIKEEA KVLRVAMGHE DEDIDEFVEA 660 HKTCLNDIMY FPTREAYGLS SVASNAEKLT AFQKEFDTVK KRMDDDTKKA VRLEQKIKLL 720 TNGYQMRAAK IWSQVEATFK QMDTAGTEYE CFQALKRQEQ LAASNRINGI WEDVQKQKEL 780 EKTLQNRYGD LLIEQERIYN LMEKYRQEAI AQEAAQKQAE AEAAAAASRD DTKMAETESE 840 QQVREQVEEA NQITESSEMT NQTGQGDSVA VDKVNDESSN GQMDGPSETL HIVNDQDADI 900 SQSQQIDATE VSVQAPMEIP AVVSGAPESN IEADAIQTVS ANTETNEPNT NSDEPKIQQ

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR KRKRKGIDYN AEIPFEKRPP PGFYDVTDES SIVEQPKFPT  240
TIEELEGERR ADKEARLRKQ DVARNKIAQR QDAPSAILQA NKMNDPETVR KRPKMNLPTP  300
QIPDYELEHI AKFGLPALSE ELSEGSGATR ALLADYTQTP RHGMTPLRTP QRTPAGKQDA  360
IMMEAENQAR LRLSQTPLLG GENPDLHPSD FSGVTPKKNE IQTPNHMLTP SVMSTPGASG  420
LTGLTPRIGM TPRDGQSFGV TPKGTPIRDE LHINEEMEMR DSAKLERARQ ADMRRNLRSG  480
LTGLPQPKNE YLITVQPVPE DDEEPEEKME EDMSDRIARE KAEEEARLQA LLKKRSKVLQ  540
RELPRPPIGS LDLIKKSLIK ADEDKSSFAP PTLIEQADEM IRKELLSLLE HDNAKYPLDE  600
KLEKEKKKGN KRGKSLQVPV IDEFDEDELK EADQLIKEEA KVLRVAMGHE DEDIDEFVEA  660
HKTCLNDIMY FPTREAYGLS SVASNAEKLT AFQKEFDTVK KRMDDDTKKA VRLEQKIKLL  720
TNGYQMRAAK IWSQVEATFK QMDTAGTEYE CFQALKRQEQ LAASNRINGI WEDVQKQKEL  780
EKTLQNRYGD LLIEQERIYN LMEKYRQEAI AQEAAQKQAE AEAAAAASRD DTKMAETESE  840
QQVREQVEEA NQITESSEMT NQTGQGDSVA VDKVNDESSN GQMDGPSETL HIVNDQDADI  900
SQSQQIDATE VSVQAPMEIP AVVSGAPESN IEADAIQTVS ANTETNEPNT NSDEPKIQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDNRHRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein