PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc033935.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 806aa MW: 92919.2 Da PI: 9.2001

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc033935.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.2	1.4e-18	49	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrng.eit.krtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 ++Y++YAk++GF+vr +++ sk+n+ +i + fvCskeg++ k +++++r+ +++rt+Cka ++v+ + + +++++ Cse_sc033935.1_g010.1 49 QYYKDYAKRAGFEVRLGQQYISKKNKdKILdLKYFVCSKEGTNPAPKAGalkKKSNSRKVSSKRTDCKAVFRVRHIPWKGYWCYDFVE 136 69***************9995554134415789***99888777767778888899***********7777789 PP FAR1 84 eHnHela 90 HnH+l+ Cse_sc033935.1_g010.1 137 GHNHSLV 143 ***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence
MAIVDAHQFN QGNFIVKSME GCKIWVPDIP VGQKPAYGMM YHSLEQAYQY YKDYAKRAGF 60 EVRLGQQYIS KKNKDKILDL KYFVCSKEGT NPAPKAGALK KKSNSRKVSS KRTDCKAVFR 120 VRHIPWKGYW CYDFVEGHNH SLVSEEDSVF LVSSREVTYT HQVFLYQASQ VNLGPVKGFN 180 LLRQIYGDYD FIGASSVDCK NYRRDVLDFI GKNDAHILVE MLMNKKDFLP NFSFEYQTGD 240 NNALTNIFWA DEYAKRNYYA FGDVMSFDAT FRTNKYKMVF VPFTGIDNHN HCVTFGAALL 300 SSKMKESYIW LLQCFKRAFV RAPKVIVTDQ DGSMKVAIES VFPLSRHRLC MWHIMQKLTS 360 KVGPVLAKDL TFKRRISDIV WTDRIEPEEF EDFWERLSES ENNAYGRLTS IDVTLWEFYN 420 HFDSVVGAGG LKIIYSIPAY YRDEPMSGLM RTSSRSESEN NAYGRLTSID LTLWEFYNHF 480 DSVVGCQRFS QRKNDHDSRY TIPDMHTELD LEQEASEIYT RSIFFDVQTE IYASVISCMS 540 VSVSADDSGK KYVIQDTGED EQISRRHRQV EGVVNEVFYE VLCKPAEDFY QCTCKRFESY 600 GLLCRHIFYV LRLSKVKKFP KKYVLRRWSK DSLQPASVIQ ATGDSPDMIL REIFRAVEYC 660 VNLYADDPEL LKKFRDHQVQ LMAKADADVP IPKKTNKRDR PASILGVSQP VETIVNVPKQ 720 VSTKGSRKRI KSSLERSVNP SGKSRKNCRY CKCSMKDHDQ AKCNAIRAEI ATKKVSDKAA 780 IKESKQKAKL AAKKAKLYDM NASVVT

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence

MAIVDAHQFN QGNFIVKSME GCKIWVPDIP VGQKPAYGMM YHSLEQAYQY YKDYAKRAGF  60
EVRLGQQYIS KKNKDKILDL KYFVCSKEGT NPAPKAGALK KKSNSRKVSS KRTDCKAVFR  120
VRHIPWKGYW CYDFVEGHNH SLVSEEDSVF LVSSREVTYT HQVFLYQASQ VNLGPVKGFN  180
LLRQIYGDYD FIGASSVDCK NYRRDVLDFI GKNDAHILVE MLMNKKDFLP NFSFEYQTGD  240
NNALTNIFWA DEYAKRNYYA FGDVMSFDAT FRTNKYKMVF VPFTGIDNHN HCVTFGAALL  300
SSKMKESYIW LLQCFKRAFV RAPKVIVTDQ DGSMKVAIES VFPLSRHRLC MWHIMQKLTS  360
KVGPVLAKDL TFKRRISDIV WTDRIEPEEF EDFWERLSES ENNAYGRLTS IDVTLWEFYN  420
HFDSVVGAGG LKIIYSIPAY YRDEPMSGLM RTSSRSESEN NAYGRLTSID LTLWEFYNHF  480
DSVVGCQRFS QRKNDHDSRY TIPDMHTELD LEQEASEIYT RSIFFDVQTE IYASVISCMS  540
VSVSADDSGK KYVIQDTGED EQISRRHRQV EGVVNEVFYE VLCKPAEDFY QCTCKRFESY  600
GLLCRHIFYV LRLSKVKKFP KKYVLRRWSK DSLQPASVIQ ATGDSPDMIL REIFRAVEYC  660
VNLYADDPEL LKKFRDHQVQ LMAKADADVP IPKKTNKRDR PASILGVSQP VETIVNVPKQ  720
VSTKGSRKRI KSSLERSVNP SGKSRKNCRY CKCSMKDHDQ AKCNAIRAEI ATKKVSDKAA  780
IKESKQKAKL AAKKAKLYDM NASVVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	692	698	PKKTNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-72	FAR1 family protein