PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc033852.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 710aa MW: 82103.1 Da PI: 8.9203

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc033852.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.4e-20	60	156	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevt 79 Y+eY+k+ GF+vrk++++k+ +e+ +++ vCs+eg+ +e+kk+ ++k++r+r+++r+gC+ak+ +++++++++e++ Cse_sc033852.1_g020.1 60 YKEYGKKGGFEVRKATQEKN--RHEVSHKWIVCSREGFLTEKKKQgtqassengdgNKKQKRNRPSSRCGCEAKICIRLTRNKQYELY 145 9************99998..6779*************99*******99************************** PP FAR1 80 kleleHnHela 90 +e++HnH+l+ Cse_sc033852.1_g020.1 146 VFEEKHNHSLV 156 *******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MDADITPEKH NHRVPILRSF GIEKASPKGT TIHWIPDVDE SIKPRLFTRF KSIDAAYESY 60 KEYGKKGGFE VRKATQEKNR HEVSHKWIVC SREGFLTEKK KQGTQASSEN GDGNKKQKRN 120 RPSSRCGCEA KICIRLTRNK QYELYVFEEK HNHSLVHPDD RHYLKSLRKL NYSDKTLLVK 180 MSNRNIGPVV AYNILSEIHG GFDKVGALPQ DAKNFKRDIL ACIGDSDANM IVKMLTKKSE 240 CVSDFSFKYR LADEKYLIGL FWADEQAKRN YYAFGDIISF DATYRTNKYS MRFVPFTGID 300 NHQRSVNFGA ALLHTEATDS FKWMLEMFKE VFLREPKVVV TDQDPAMKVA IEAVFTNARH 360 RFCMWHIMEK LTSKVGTSIS RSGFKKKISK IIWTDRLDPK LKLLFTSRIV NEFHLEDNKW 420 LSDMFKLREK WIPAYFRDMP LSGLMRTTSR SESKNDHDTR YTTPKTETTL PFEAEAILIY 480 TRKLFVDVVQ KEMLAAVHAC YCIGVVSIDE SREYTILDTD VRVKNFDDNG DEIIGGHNTI 540 EVKYQVEYKE SDGTLLCTCQ YFERCGLLCR HIFYVLRILK VNSFPKRYIQ RRWTRDCVPI 600 KSSEASTIRH GLGEIQEQSG ALIRDIYYTV DATINRLLSN NAKLVAYRMV QKELLEKADA 660 EMENQPVTGN KEFIHALLDL PEIEEDDDTI LNPIPIDPKG CGRATASLLK

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MDADITPEKH NHRVPILRSF GIEKASPKGT TIHWIPDVDE SIKPRLFTRF KSIDAAYESY  60
KEYGKKGGFE VRKATQEKNR HEVSHKWIVC SREGFLTEKK KQGTQASSEN GDGNKKQKRN  120
RPSSRCGCEA KICIRLTRNK QYELYVFEEK HNHSLVHPDD RHYLKSLRKL NYSDKTLLVK  180
MSNRNIGPVV AYNILSEIHG GFDKVGALPQ DAKNFKRDIL ACIGDSDANM IVKMLTKKSE  240
CVSDFSFKYR LADEKYLIGL FWADEQAKRN YYAFGDIISF DATYRTNKYS MRFVPFTGID  300
NHQRSVNFGA ALLHTEATDS FKWMLEMFKE VFLREPKVVV TDQDPAMKVA IEAVFTNARH  360
RFCMWHIMEK LTSKVGTSIS RSGFKKKISK IIWTDRLDPK LKLLFTSRIV NEFHLEDNKW  420
LSDMFKLREK WIPAYFRDMP LSGLMRTTSR SESKNDHDTR YTTPKTETTL PFEAEAILIY  480
TRKLFVDVVQ KEMLAAVHAC YCIGVVSIDE SREYTILDTD VRVKNFDDNG DEIIGGHNTI  540
EVKYQVEYKE SDGTLLCTCQ YFERCGLLCR HIFYVLRILK VNSFPKRYIQ RRWTRDCVPI  600
KSSEASTIRH GLGEIQEQSG ALIRDIYYTV DATINRLLSN NAKLVAYRMV QKELLEKADA  660
EMENQPVTGN KEFIHALLDL PEIEEDDDTI LNPIPIDPKG CGRATASLLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	121	KKQKRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-75	FAR1 family protein