PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc033219.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 418aa MW: 47107.4 Da PI: 9.8026

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc033219.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3e-15	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +v+q+G++ W++I+++m + R +k+c +rw +yl Cse_sc033219.1_g010.1 4 RQRWQPEEDALLRAYVHQYGPKEWNLISHRMSkpLDRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	33	1.4e-10	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T++E+ l + + +++G++ Wk+Ia++++ gRt+k + +w + Cse_sc033219.1_g010.1 59 KGSLTPQEQSLVISLQAKYGNK-WKKIASEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MKERQRWQPE EDALLRAYVH QYGPKEWNLI SHRMSKPLDR DPKSCLERWK NYLKPGIKKG 60 SLTPQEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQAKQ QLQNSKKNNI 120 GSSGSDISTL QGNNISTSVG AVSGEPEKAV QGTYDHILET FAEKYVQPYL NPASVVPVPV 180 SLPVPVPVMP NLNSPILSLG PGVGVANSGP TPDPVAMVAT TLPPWMSNSS ASSSTTKSTT 240 PSPSVSLTLS PSEPVVVDPV QVQVQSDHPV HSRFLPVQQV GTLVQYCKEV EEAKQNWVQH 300 KKEATWRLNR LEQQLEAEKN RKRREKMEEI EAKIRSLREE ETASLGRMEH EYREQLTALQ 360 RDAEGKEMKL MEAWSNKQMK LSNVVEQING GLIQHQHMIS GTNHNHNHHP HHHHHGLS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MKERQRWQPE EDALLRAYVH QYGPKEWNLI SHRMSKPLDR DPKSCLERWK NYLKPGIKKG  60
SLTPQEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQAKQ QLQNSKKNNI  120
GSSGSDISTL QGNNISTSVG AVSGEPEKAV QGTYDHILET FAEKYVQPYL NPASVVPVPV  180
SLPVPVPVMP NLNSPILSLG PGVGVANSGP TPDPVAMVAT TLPPWMSNSS ASSSTTKSTT  240
PSPSVSLTLS PSEPVVVDPV QVQVQSDHPV HSRFLPVQQV GTLVQYCKEV EEAKQNWVQH  300
KKEATWRLNR LEQQLEAEKN RKRREKMEEI EAKIRSLREE ETASLGRMEH EYREQLTALQ  360
RDAEGKEMKL MEAWSNKQMK LSNVVEQING GLIQHQHMIS GTNHNHNHHP HHHHHGLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	326	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	3e-60	MYB family protein