PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc032945.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 462aa MW: 50035.8 Da PI: 8.7037

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc032945.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.9e-06	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F r nL+ H r H Cse_sc032945.1_g020.1 83 YVCEICNKGFQRDQNLQLHRRGH 105 9********************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MSNISGDGGS YSSGNTNGCG VIEEGQQTQL PIVNSHSVDI GSTSQEHVQD SSKKKKRSLP 60 GTPDPSAQVI ALSPTSLMAK NKYVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSTEII 120 KRVYICPEPT CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CEKCSKRYAV QCDWKAHSKI 180 CGTKEYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKLTQT MPQDHHHVPD QLNQNINPTT 240 SLTSPKFSHG GTMHDSKTPS DLLPLNIMHS GRGNLFGTSP RNGSPSSLQL GGGTTLSSSP 300 LTSATALLQK AAQMGATSSN GSNNFTTMAP PSYGGTGCGA YHGSENLVDP YQSQLAGIIG 360 GGFSSQFQEN SLSRFFSPSI DGGGHSDGIG VYSGFMNPSK EHIMNNKNNA GHDANQALND 420 SDNPLLKFKR DGNGDNLTVD FMGVGGMRLT SFNGQHHQGM EI

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MSNISGDGGS YSSGNTNGCG VIEEGQQTQL PIVNSHSVDI GSTSQEHVQD SSKKKKRSLP  60
GTPDPSAQVI ALSPTSLMAK NKYVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSTEII  120
KRVYICPEPT CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CEKCSKRYAV QCDWKAHSKI  180
CGTKEYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKLTQT MPQDHHHVPD QLNQNINPTT  240
SLTSPKFSHG GTMHDSKTPS DLLPLNIMHS GRGNLFGTSP RNGSPSSLQL GGGTTLSSSP  300
LTSATALLQK AAQMGATSSN GSNNFTTMAP PSYGGTGCGA YHGSENLVDP YQSQLAGIIG  360
GGFSSQFQEN SLSRFFSPSI DGGGHSDGIG VYSGFMNPSK EHIMNNKNNA GHDANQALND  420
SDNPLLKFKR DGNGDNLTVD FMGVGGMRLT SFNGQHHQGM EI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	82	KKKKRSLPGTPDPSAQVIALSPTSLMAKNK
2	54	83	KKKKRSLPGTPDPSAQVIALSPTSLMAKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-106	C2H2 family protein