PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc032466.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 309aa    MW: 35310.3 Da    PI: 4.6338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc032466.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS86.15.7e-271092742185
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL++ Aea   g+++laq + + + + asp g +++Rl   +         r +se  + +  +++    s++  +a+++f+ v+P
  Cse_sc032466.1_g010.1 109 QNLLMAHAEATGLGQNKLAQVIQKCVCQKASPIGPAIERLGLNLF--------R-CSENQEDMYIKQK----SINFKMAFRTFYAVFP 183
                            689999999999999999999999999999999999999875543........3.2223333445555....68999*********** PP

                   GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            + +f+h++aN+aI ea+ ++ e vHi+D+d+  G QWp+ ++a+a+    + sl iT ++  ++++  + e+t+++L +fA++ g+++
  Cse_sc032466.1_g010.1 184 YGRFAHFIANSAIIEAIPTHvESVHILDLDLYVGCQWPPVIEAIAQM---KKSLTITNIKL-KQDQDSQFEQTKRQLCEFARSYGLNL 267
                            *******************99************************95...567*******9.668999*******************9 PP

                   GRAS 177 efnvlvakr 185
                            + + +  + 
  Cse_sc032466.1_g010.1 268 NVQEM--DM 274
                            98875..22 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MQSEPFLDPS RSTHSNDHST LVQDDIKFDF CASEIEQESP IKMDDFEDVC KWLCDDDQQM  60
EDIPADSYVW GPSMLMNSFH ACAFLPYETQ SSMVYIDDTM EIESQTRLQN LLMAHAEATG  120
LGQNKLAQVI QKCVCQKASP IGPAIERLGL NLFRCSENQE DMYIKQKSIN FKMAFRTFYA  180
VFPYGRFAHF IANSAIIEAI PTHVESVHIL DLDLYVGCQW PPVIEAIAQM KKSLTITNIK  240
LKQDQDSQFE QTKRQLCEFA RSYGLNLNVQ EMDMAQIVNI MEGGKLGREF MAFNFMVNPS  300
TYAKGIKHN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-13GRAS family protein