PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc032226.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 385aa MW: 43999.4 Da PI: 9.6285

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc032226.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv +++++G g+W++ + + g+ R++k+c++rw +yl Cse_sc032226.1_g020.1 13 KGPWTSEEDRKLVAYIEEHGHGSWRALPLKAGLQRCGKSCRLRWTNYL 60 79********************************************97 PP
2	Myb_DNA-binding	54	3.9e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l Cse_sc032226.1_g020.1 66 RGKFSSQEEQTIIQLHALLGNR-WSAIASHLP-KRTDNEIKNYWNTHL 111 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MGRSPSFVKG LKKGPWTSEE DRKLVAYIEE HGHGSWRALP LKAGLQRCGK SCRLRWTNYL 60 RPDIKRGKFS SQEEQTIIQL HALLGNRWSA IASHLPKRTD NEIKNYWNTH LKKRLTKMGI 120 DPTTHKSKTA VNTNVSHMTQ WENARLEAEA RLVRGSRVVS NFYQRIHNGS AHYINKSSLP 180 SLPVPQPLCF DVLKAWQGLT LSKLSNLNGL DTLNDQTMPI MNVLESVEPQ TLTDMSTEYH 240 MNEPSKDSFN TFDIPKEEAT QHTLEVGDMI YQDNYLGEAF TNHLVNDANS HGRFEDDSNY 300 WKSFYASSLL LHRPPPPSSS XNTVRHHHPP TPPPSTTTTT RHHQKTHKPR NNPNPFPIPL 360 LCCYVKNSSE KQFSESVEVV NLLKF

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MGRSPSFVKG LKKGPWTSEE DRKLVAYIEE HGHGSWRALP LKAGLQRCGK SCRLRWTNYL  60
RPDIKRGKFS SQEEQTIIQL HALLGNRWSA IASHLPKRTD NEIKNYWNTH LKKRLTKMGI  120
DPTTHKSKTA VNTNVSHMTQ WENARLEAEA RLVRGSRVVS NFYQRIHNGS AHYINKSSLP  180
SLPVPQPLCF DVLKAWQGLT LSKLSNLNGL DTLNDQTMPI MNVLESVEPQ TLTDMSTEYH  240
MNEPSKDSFN TFDIPKEEAT QHTLEVGDMI YQDNYLGEAF TNHLVNDANS HGRFEDDSNY  300
WKSFYASSLL LHRPPPPSSS XNTVRHHHPP TPPPSTTTTT RHHQKTHKPR NNPNPFPIPL  360
LCCYVKNSSE KQFSESVEVV NLLKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	7e-88	MYB family protein