PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc031299.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 694aa MW: 75615.2 Da PI: 7.3551

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc031299.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	85.1	8.5e-27	509	580	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ keyhr+hkvC hsk+p+v+v l rfh++sef+eekrsCrrrL++hn+rrrk+++ Cse_sc031299.1_g020.1 509 RCQVEGCNLDLSSSKEYHRKHKVCASHSKSPKVIVWTL------FIFRFHSMSEFNEEKRSCRRRLSDHNARRRKPNQ 580 6*******************************9776......357**************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MIVGNSNKIM VVAQGAVESV LARTSHIQLA DGCDVPMDEA CRQLVLSRHM EMSSKGLRCL 60 GLAYKDDLGE LSDYDGEHHP SHKKLLDPTR YVSIETDLIF VGVVVGLRDP PRAEVKSAIE 120 ECGEAGIKVL VITGDYKSTA EAICSEIGLF YEGEDLRGKS FTGKEFIGFS TMQQRDILSK 180 PGGKVFSRAE PRHKQEIKLA DIGIAMGITG TEVAKEASDM VLADDNFSTI VSAIGEGRSI 240 YNNMKAFISL TDIAASVCCQ GARFLEGNSE SSNGFCCGET NVHCIKTKGD VPVTVVSGTV 300 TNGIGEQRVD MLVPSSPTRL SSSGCDLTSC NGMHPSSNDV LTILLLALPP QTCISYSNME 360 WNTKWEWENL DMYNSKSIMS PKKTQPAYWG VGEVEAIDGS LSFNVSGVVG GSGGSVSDVG 420 NNSSGKSSIS ASTESSMKEG MKGSGYSFVG SVSSGEPFIG LKLGKRTYFE NGYAKNNTNK 480 SYSQLAVPAS TISTGKKVKS GYQTTPIVRC QVEGCNLDLS SSKEYHRKHK VCASHSKSPK 540 VIVWTLFIFR FHSMSEFNEE KRSCRRRLSD HNARRRKPNQ EAMRFNPAYS SFYGTESLDV 600 LSHSTGAQLS DVLNMPNLAR NRLVPSKGAR AEIFDQVPHA SPLSSQQYWQ ANQQSTDPRV 660 HASATKTSNA NNHFQEFQIF KPQYESSFLF HPNS

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MIVGNSNKIM VVAQGAVESV LARTSHIQLA DGCDVPMDEA CRQLVLSRHM EMSSKGLRCL  60
GLAYKDDLGE LSDYDGEHHP SHKKLLDPTR YVSIETDLIF VGVVVGLRDP PRAEVKSAIE  120
ECGEAGIKVL VITGDYKSTA EAICSEIGLF YEGEDLRGKS FTGKEFIGFS TMQQRDILSK  180
PGGKVFSRAE PRHKQEIKLA DIGIAMGITG TEVAKEASDM VLADDNFSTI VSAIGEGRSI  240
YNNMKAFISL TDIAASVCCQ GARFLEGNSE SSNGFCCGET NVHCIKTKGD VPVTVVSGTV  300
TNGIGEQRVD MLVPSSPTRL SSSGCDLTSC NGMHPSSNDV LTILLLALPP QTCISYSNME  360
WNTKWEWENL DMYNSKSIMS PKKTQPAYWG VGEVEAIDGS LSFNVSGVVG GSGGSVSDVG  420
NNSSGKSSIS ASTESSMKEG MKGSGYSFVG SVSSGEPFIG LKLGKRTYFE NGYAKNNTNK  480
SYSQLAVPAS TISTGKKVKS GYQTTPIVRC QVEGCNLDLS SSKEYHRKHK VCASHSKSPK  540
VIVWTLFIFR FHSMSEFNEE KRSCRRRLSD HNARRRKPNQ EAMRFNPAYS SFYGTESLDV  600
LSHSTGAQLS DVLNMPNLAR NRLVPSKGAR AEIFDQVPHA SPLSSQQYWQ ANQQSTDPRV  660
HASATKTSNA NNHFQEFQIF KPQYESSFLF HPNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	3e-35	SBP family protein