PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc031074.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 564aa MW: 63517.6 Da PI: 5.4744

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc031074.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.4e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed +lv ++++G ++W++ ++ g+ R++k+c++rw +yl Cse_sc031074.1_g010.1 16 RGPWSPSEDIKLVTFIQKHGHPNWRSLPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	50.7	4.2e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++++ +G++ W++Ia++++ gRt++++k+ w+++l Cse_sc031074.1_g010.1 69 RGNFTPQEEQSIIRLHATFGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MGGGRMPCCD KSKVKRGPWS PSEDIKLVTF IQKHGHPNWR SLPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTPQEEQSI IRLHATFGNK WSKIASHLPG RTDNEIKNVW NTHLKKMSLQ 120 RLAMNINTID DAPNSSSSKI SDSDPNSNNE ELTNQGISSS HDQKQASVVE NPKMIVTATG 180 PILVQEIIDH PLTPSSSTVS SNSSQDYNAY INYCNINNPP SHNEEITINN INIEIPSLES 240 PEDEFWSMLE PPHPINLDND HEDVDDGSWK LGHETMEAVE YWVRMLEDEL GLEKADPFAD 300 TTTTATSQQI DQNNWLFFST SPSKDLTVIP TMTNNNPPPP PPTLTLVEKL YAVHNINNLI 360 PVKLDLNELN YSSWCYFFKI HCSNFGVLKH IEGSKEDAST TTPPTEEWLT ADSIVKSWII 420 LTLFIKLNPK TALYAWQQVE TLFQDNKCTR TVALKGELRM LQMGEQSAEE YFSKIDSIIT 480 LLNDLASDIS EDDVVTYAIN GLSKKFGSLA QIITHKDPFP TLTTMRSMVT IEEMRLRCKQ 540 PTMSTNTTSS APQALLSVSQ NRGQ

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MGGGRMPCCD KSKVKRGPWS PSEDIKLVTF IQKHGHPNWR SLPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTPQEEQSI IRLHATFGNK WSKIASHLPG RTDNEIKNVW NTHLKKMSLQ  120
RLAMNINTID DAPNSSSSKI SDSDPNSNNE ELTNQGISSS HDQKQASVVE NPKMIVTATG  180
PILVQEIIDH PLTPSSSTVS SNSSQDYNAY INYCNINNPP SHNEEITINN INIEIPSLES  240
PEDEFWSMLE PPHPINLDND HEDVDDGSWK LGHETMEAVE YWVRMLEDEL GLEKADPFAD  300
TTTTATSQQI DQNNWLFFST SPSKDLTVIP TMTNNNPPPP PPTLTLVEKL YAVHNINNLI  360
PVKLDLNELN YSSWCYFFKI HCSNFGVLKH IEGSKEDAST TTPPTEEWLT ADSIVKSWII  420
LTLFIKLNPK TALYAWQQVE TLFQDNKCTR TVALKGELRM LQMGEQSAEE YFSKIDSIIT  480
LLNDLASDIS EDDVVTYAIN GLSKKFGSLA QIITHKDPFP TLTTMRSMVT IEEMRLRCKQ  540
PTMSTNTTSS APQALLSVSQ NRGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	4e-70	MYB family protein