PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030794.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 392aa MW: 43796.8 Da PI: 8.4108

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030794.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.5e-17	65	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd +l+++v+ G ++W+ I + ++ gR++k+c++rw + Cse_sc030794.1_g010.1 65 KGSWTPEEDAKLIQLVETQGARNWSVIGSSIP-GRSGKSCRLRWCNQ 110 799***************************.*********985 PP
2	Myb_DNA-binding	37.5	5.4e-12	119	161	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a+ +G++ W I++ ++ g t++ +k++w++ Cse_sc030794.1_g010.1 119 PFTPHEDDDILRAHLIHGNK-WFVISKLLP-GSTDNAIKNHWNST 161 89****************.*****.*********986 PP
3	Myb_DNA-binding	54.1	3.5e-17	263	308	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd +l+++v+ G ++W+ I + ++ gR++k+c++rw + Cse_sc030794.1_g010.1 263 KGSWTPEEDAKLIKLVETQGARNWSVIGSSIP-GRSDKSCRLRWCNQ 308 799***************************.*********985 PP
4	Myb_DNA-binding	42.6	1.4e-13	317	359	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a +G++ W+ I++ ++ gRt k +k++w++ Cse_sc030794.1_g010.1 317 PFTPHEDDVILHAYLIHGNK-WSVISKLLP-GRTNKAIKNHWNST 359 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MIRENANTCE TERTRPLYEK RSIKAVVIGW GKEGGGKGDG GDCGLKRWNH EGEGKQHRCS 60 MAPMKGSWTP EEDAKLIQLV ETQGARNWSV IGSSIPGRSG KSCRLRWCNQ LSPNVQHRPF 120 TPHEDDDILR AHLIHGNKWF VISKLLPGST DNAIKNHWNS TLRRRGLTLT QSSSESESTQ 180 SDDDNEGLGL KNKKRRRVSV SDFSSYDGMT VLTLLLPGDG EKKKDGDQVE KGAAEIDDTC 240 LVDVRSYIDE LRAKDGSSFG SKKGSWTPEE DAKLIKLVET QGARNWSVIG SSIPGRSDKS 300 CRLRWCNQLS PNVQHHPFTP HEDDVILHAY LIHGNKWSVI SKLLPGRTNK AIKNHWNSTL 360 MRRGLTRSSE SESTQSDDND DEGLTNHSHP TT

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MIRENANTCE TERTRPLYEK RSIKAVVIGW GKEGGGKGDG GDCGLKRWNH EGEGKQHRCS  60
MAPMKGSWTP EEDAKLIQLV ETQGARNWSV IGSSIPGRSG KSCRLRWCNQ LSPNVQHRPF  120
TPHEDDDILR AHLIHGNKWF VISKLLPGST DNAIKNHWNS TLRRRGLTLT QSSSESESTQ  180
SDDDNEGLGL KNKKRRRVSV SDFSSYDGMT VLTLLLPGDG EKKKDGDQVE KGAAEIDDTC  240
LVDVRSYIDE LRAKDGSSFG SKKGSWTPEE DAKLIKLVET QGARNWSVIG SSIPGRSDKS  300
CRLRWCNQLS PNVQHHPFTP HEDDVILHAY LIHGNKWSVI SKLLPGRTNK AIKNHWNSTL  360
MRRGLTRSSE SESTQSDDND DEGLTNHSHP TT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	196	LKNKKRR
2	194	198	KRRRV
3	194	224	KRRRVSVSDFSSYDGMTVLTLLLPGDGEKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-44	MYB family protein