PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030185.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 606aa MW: 69788.3 Da PI: 9.7513

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030185.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.1	1.4e-18	11	105	1	90
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 ++Y++YAk++GF+vr +++ s ++++ + fvCsk g++ k +++++r+ +++rt+Cka ++v+ + + +++++ Cse_sc030185.1_g020.1 11 QYYKDYAKRAGFKVRLGQQYISkkTKDKILDLKYFVCSKDGTNPAPKAGalkKKSNSRKVSSKRTDCKAVFQVRHIPGKGYWCYNFVE 98 69***************9994233334445789***99888777767778888899***********999999* PP FAR1 84 eHnHela 90 HnH+l+ Cse_sc030185.1_g020.1 99 GHNHSLV 105 ***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MMYHSLEQAY QYYKDYAKRA GFKVRLGQQY ISKKTKDKIL DLKYFVCSKD GTNPAPKAGA 60 LKKKSNSRKV SSKRTDCKAV FQVRHIPGKG YWCYNFVEGH NHSLVSEEDS VFLVSSREVT 120 YTQQVFIYQA SQVNLGPVKG FNLLRLIYGD YDFIGASLVD CKNYRRDVLD FIGKNDARML 180 VEMLMNKEDF FPNFSFEYQT GENNALTNLF WVDEYAKRNY YAFGDVMSFD ATFRTNKYKM 240 VFVPFTGIDN HDHCVTFGAA LLSSETKESY IWLLQCFKKA FVRAPKVIVT DQDASMKVAI 300 GSVFPLSRHR LCMWHVMQKL TSKVGPVLAK DLTFKRRISD IVWTDRIEPG EFKDLWELLL 360 VDFDLKGHKW LSDMYNLRHK WIPTYYRDEP MSGLMRTSSR SESENTSYGR LTSIDLTLWE 420 FYNHFDSVVG RWSKDSLPPA SVIQATGDIP DMILREIFKA VEYCVNRYAD DPELMQKFRD 480 HQVQLMAKAD ADFPIPKKTN KRDRLASILG VSQPVETIVN VSTKGSRKRI KSSLERSVNP 540 SGKCRKNCRY CKCSMKDHDQ TKCNAIRAEI AAKKANDKAA IKESKQKAKL AAKKAKLSDM 600 NACIVA

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MMYHSLEQAY QYYKDYAKRA GFKVRLGQQY ISKKTKDKIL DLKYFVCSKD GTNPAPKAGA  60
LKKKSNSRKV SSKRTDCKAV FQVRHIPGKG YWCYNFVEGH NHSLVSEEDS VFLVSSREVT  120
YTQQVFIYQA SQVNLGPVKG FNLLRLIYGD YDFIGASLVD CKNYRRDVLD FIGKNDARML  180
VEMLMNKEDF FPNFSFEYQT GENNALTNLF WVDEYAKRNY YAFGDVMSFD ATFRTNKYKM  240
VFVPFTGIDN HDHCVTFGAA LLSSETKESY IWLLQCFKKA FVRAPKVIVT DQDASMKVAI  300
GSVFPLSRHR LCMWHVMQKL TSKVGPVLAK DLTFKRRISD IVWTDRIEPG EFKDLWELLL  360
VDFDLKGHKW LSDMYNLRHK WIPTYYRDEP MSGLMRTSSR SESENTSYGR LTSIDLTLWE  420
FYNHFDSVVG RWSKDSLPPA SVIQATGDIP DMILREIFKA VEYCVNRYAD DPELMQKFRD  480
HQVQLMAKAD ADFPIPKKTN KRDRLASILG VSQPVETIVN VSTKGSRKRI KSSLERSVNP  540
SGKCRKNCRY CKCSMKDHDQ TKCNAIRAEI AAKKANDKAA IKESKQKAKL AAKKAKLSDM  600
NACIVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	496	502	PKKTNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-60	FAR1 family protein