PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030096.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 540aa MW: 62136.9 Da PI: 8.9513

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030096.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31	8.4e-10	120	168	47	90
FAR1 47 k.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++ +rr+ a++r+gCka l+++ ++d+k++v+++ ++HnH+l+ Cse_sc030096.1_g010.1 120 NiqivkQVIRRRRCASQRCGCKALLRLRHTEDNKYVVYTFFEKHNHPLV 168 1344434567788899*******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MTSPSGALPD NLVESAPGSS LGDGPATGAP RQIESPPSCN IVQDDIVVDD QSVPLVGSYQ 60 RTPPGSKFWI PEAKNKPVEG TLFDTIDLAL NFYKEYAREE GVKPAPKSDK KAVDTSKSDN 120 IQIVKQVIRR RRCASQRCGC KALLRLRHTE DNKYVVYTFF EKHNHPLVQE NDYKYLRAAR 180 KLSFPKQQLL YQLSNANIGP TRAWKVFKEM FGGFENIGLT DVECKNYRRG LNMFIDERDA 240 QMVVEKLLSR KEVSDFSVEY KQDKKTKSLV GLFWADEQAK RHYAAFGDVV SFDATFRSNR 300 YNMVLVPFTG IDNHNRCIIF GAALLASESA KRYTWLLKRF LKIFGTAPKV VVTDQDPAMK 360 IAIEEKFPDT RHRLCMWHIM QKLTGKVGPT LCSNTDFKRR LCDIVWTDKI EPDVFETEWK 420 SIIDDFNLNE NKWLSDMFGM RYKWIPAYFC HEPMSGLMRT TSRSKSENHF FGQLTNPDLS 480 LIEFLSHYDT ALDSQRFIYG KNTHNSNYTT PDLKTHLQVE KDATELYTIT LFYKRISNKL

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MTSPSGALPD NLVESAPGSS LGDGPATGAP RQIESPPSCN IVQDDIVVDD QSVPLVGSYQ  60
RTPPGSKFWI PEAKNKPVEG TLFDTIDLAL NFYKEYAREE GVKPAPKSDK KAVDTSKSDN  120
IQIVKQVIRR RRCASQRCGC KALLRLRHTE DNKYVVYTFF EKHNHPLVQE NDYKYLRAAR  180
KLSFPKQQLL YQLSNANIGP TRAWKVFKEM FGGFENIGLT DVECKNYRRG LNMFIDERDA  240
QMVVEKLLSR KEVSDFSVEY KQDKKTKSLV GLFWADEQAK RHYAAFGDVV SFDATFRSNR  300
YNMVLVPFTG IDNHNRCIIF GAALLASESA KRYTWLLKRF LKIFGTAPKV VVTDQDPAMK  360
IAIEEKFPDT RHRLCMWHIM QKLTGKVGPT LCSNTDFKRR LCDIVWTDKI EPDVFETEWK  420
SIIDDFNLNE NKWLSDMFGM RYKWIPAYFC HEPMSGLMRT TSRSKSENHF FGQLTNPDLS  480
LIEFLSHYDT ALDSQRFIYG KNTHNSNYTT PDLKTHLQVE KDATELYTIT LFYKRISNKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-71	FAR1 family protein