PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc029964.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 653aa MW: 73111.5 Da PI: 7.1932

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc029964.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3.1e-07	15	40	1	26
TSSS-HHHHHHHHHHHHHTTTT-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWkt 26 +g+WT+eEd +l+++v+ G ++W++ Cse_sc029964.1_g030.1 15 KGSWTPEEDAKLIHLVETQGARNWSK 40 799*********************96 PP
2	Myb_DNA-binding	51.7	2.1e-16	40	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd +l+++v+ G ++W+ I + ++ gR++k+c++rw + Cse_sc029964.1_g030.1 40 KGSWTPEEDAKLIHLVETQGARNWSVIGSSIP-GRSGKSCRLRWCNQ 85 799***************************.*********985 PP
3	Myb_DNA-binding	46.7	7.5e-15	94	136	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a+ +G++ W+ I++ ++ gRt++ +k++w++ Cse_sc029964.1_g030.1 94 PFTPHEDDVILRAHLIHGNK-WSVISKLLP-GRTDNAIKNHWNST 136 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MTSSSSNDDV NLFKKGSWTP EEDAKLIHLV ETQGARNWSK GSWTPEEDAK LIHLVETQGA 60 RNWSVIGSSI PGRSGKSCRL RWCNQLSPNV QHRPFTPHED DVILRAHLIH GNKWSVISKL 120 LPGRTDNAIK NHWNSTLRRR GLTLTRSSSE SESTQRRGLT LTRSSSESES TQSDDNDEGL 180 KNKRRRCVSV SDASSCDGMT VLTLLPPGDG EKKKGGGDEV EKGTVEIDDP CLVDVMRKMI 240 AKEVRSYIDE LRAKDGLSFG PTTDSLFNLP HLQTLNLAFN NFTGSQIPRE IGRFSNSLTH 300 LNLSNCGFSG QVPPDITLLH KLVSLDLSSY GFLEYANVTS KYSFMLLNPP YTGLKGKLPH 360 YIFCLHSLET LDLGGNDFTG GIPSEIPVNL THLNYLRLSY NRLNGTLPSW LFTSPSLEFL 420 HLTKNMLSGN VPFESFALPS LKNLYLKGNQ LAGHIDVQTF RHLTNLTYLD LSSNNFSGEW 480 ELDTLLTSLR NLEYLDLSYN GFSVTTKNAY HYVNPGDIPE SLAGIKRLEV LSLSHNRLVG 540 RIPDGTQFNT FDENSFAENL GLCGFPLPKK CSEYTHKPQL ESYEHHEEES GFTWEVVTLG 600 YGCGTLLGLV MGYLMLSTRK VKWFNAIADA TESLIKRPSV DCGVFNYRRK RIF

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MTSSSSNDDV NLFKKGSWTP EEDAKLIHLV ETQGARNWSK GSWTPEEDAK LIHLVETQGA  60
RNWSVIGSSI PGRSGKSCRL RWCNQLSPNV QHRPFTPHED DVILRAHLIH GNKWSVISKL  120
LPGRTDNAIK NHWNSTLRRR GLTLTRSSSE SESTQRRGLT LTRSSSESES TQSDDNDEGL  180
KNKRRRCVSV SDASSCDGMT VLTLLPPGDG EKKKGGGDEV EKGTVEIDDP CLVDVMRKMI  240
AKEVRSYIDE LRAKDGLSFG PTTDSLFNLP HLQTLNLAFN NFTGSQIPRE IGRFSNSLTH  300
LNLSNCGFSG QVPPDITLLH KLVSLDLSSY GFLEYANVTS KYSFMLLNPP YTGLKGKLPH  360
YIFCLHSLET LDLGGNDFTG GIPSEIPVNL THLNYLRLSY NRLNGTLPSW LFTSPSLEFL  420
HLTKNMLSGN VPFESFALPS LKNLYLKGNQ LAGHIDVQTF RHLTNLTYLD LSSNNFSGEW  480
ELDTLLTSLR NLEYLDLSYN GFSVTTKNAY HYVNPGDIPE SLAGIKRLEV LSLSHNRLVG  540
RIPDGTQFNT FDENSFAENL GLCGFPLPKK CSEYTHKPQL ESYEHHEEES GFTWEVVTLG  600
YGCGTLLGLV MGYLMLSTRK VKWFNAIADA TESLIKRPSV DCGVFNYRRK RIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	2e-41	MYB family protein