PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc028943.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 382aa MW: 42259.6 Da PI: 6.7274

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc028943.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl Cse_sc028943.1_g010.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Cse_sc028943.1_g010.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PTKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVSHKPKN DTLLCNDGQS KSVANLSHMA QWESARLEAE ARLAKQSKLR CTSPVEKQMG 180 MGSTESSSTG TPAKVLAPNR CLDILNAWNK VWGTKHNDVG HEGNGNEDLH SPTSTLSTTG 240 NEESSTNLIE LVGGNSSGSC DDGTTGEECE EEWEYKDENR IENSNPGFNR ISMSSIDNNN 300 NNGNGHMPSG NFLESFTDLL LSSSGTSNNR NTQGGGNSNT PLEPNGVSSN NNNTTCYEDN 360 NKNYWNNILN LVNSSLQDPP LF

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PTKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVSHKPKN DTLLCNDGQS KSVANLSHMA QWESARLEAE ARLAKQSKLR CTSPVEKQMG  180
MGSTESSSTG TPAKVLAPNR CLDILNAWNK VWGTKHNDVG HEGNGNEDLH SPTSTLSTTG  240
NEESSTNLIE LVGGNSSGSC DDGTTGEECE EEWEYKDENR IENSNPGFNR ISMSSIDNNN  300
NNGNGHMPSG NFLESFTDLL LSSSGTSNNR NTQGGGNSNT PLEPNGVSSN NNNTTCYEDN  360
NKNYWNNILN LVNSSLQDPP LF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-103	MYB family protein