PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc028571.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 614aa    MW: 68270.1 Da    PI: 6.0262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc028571.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.41.7e-942496133374
                   GRAS   3 elLlecAeavssgdlelaqalLarlsel...aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                            ++L+++Ae + sg+++ aq +Larl+++   as ++  +p+qR+a+yf+eAL+  l++   + ++  p + t++ n   ++ a+k+fs
  Cse_sc028571.1_g030.1 249 DQLFAAAELMLSGNFSHAQGILARLNHQfssASAQAsnKPFQRAAFYFKEALQMNLQS-LMSNSNLNPNRITPQFNGMFKMGAYKMFS 335
                            79*************************975533333346******************9.44444445666666678************ PP

                   GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAe 170
                            evsPi++f ++t Nq+I ea+  ++ +HiiDfdi+ G+QW++++q+L +R+   +g  sl+iT+++sp++++  el  ++e+L++fA+
  Cse_sc028571.1_g030.1 336 EVSPIIQFMNFTSNQTIIEALGDANNIHIIDFDIGFGAQWASFIQELPNRNkgsGGGCSLKITAFASPSTHHPIELGLMHENLSQFAQ 423
                            ***************************************************6655567****************************** PP

                   GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                            e+g++fe +v+   +++++++++++v+ +Ea+aV+l +   +++     l s+++++L+++k+lsP++vv  ++ +++++ +F + +l
  Cse_sc028571.1_g030.1 424 EIGISFELEVV---NFDSFDPRTFSVSGNEAIAVSLPIWSASTH-----L-SAIPSILHFIKQLSPRIVVSLDRGCERTDLPFPHYLL 502
                            **********8...9**********************9777776.....3.33678******************************** PP

                   GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                            + l+yy +l+ds+  a+    s++ +k+Er+l++++i+ +v  + +      e + +W++ +++ G++pv +s++a++qa++l+++++
  Cse_sc028571.1_g030.1 503 QGLQYYEVLLDSFdGAN--VVSDTSNKIERFLFQPQIERMVLGKLQF----PEPMPHWKSLFTAGGYSPVLFSNFAETQAECLVKRMQ 584
                            *************5555..58999*****************998887....9************************************ PP

                   GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            ++g+r+e++ +slvl+W++r+L++vSaW+
  Cse_sc028571.1_g030.1 585 VQGFRIEKRLASLVLCWQNRELMTVSAWK 613
                            ****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    
MRSIPFEAST TFQPSPDPST KTKEKSFNSN EPISVLDTRR SPSPSTSTST LSGGTTTTTT  60
TAPPLGVTTN HHHIQQKWPE NVPQEMGFFG YLANNFLVGG GELQPVPAVF EDDWENLLTQ  120
DQSLRWISGD FEDSSLSLQQ LLQSNNQIEQ NAASVENQLN TAFNAQNANL LPFSDLGFQK  180
DAILDTGFQK DQILNAGLPK DLILNQGFQK NGVLKPAVVV GAKQELVQSG IVLPHNNHHQ  240
HHQYQVMCDQ LFAAAELMLS GNFSHAQGIL ARLNHQFSSA SAQASNKPFQ RAAFYFKEAL  300
QMNLQSLMSN SNLNPNRITP QFNGMFKMGA YKMFSEVSPI IQFMNFTSNQ TIIEALGDAN  360
NIHIIDFDIG FGAQWASFIQ ELPNRNKGSG GGCSLKITAF ASPSTHHPIE LGLMHENLSQ  420
FAQEIGISFE LEVVNFDSFD PRTFSVSGNE AIAVSLPIWS ASTHLSAIPS ILHFIKQLSP  480
RIVVSLDRGC ERTDLPFPHY LLQGLQYYEV LLDSFDGANV VSDTSNKIER FLFQPQIERM  540
VLGKLQFPEP MPHWKSLFTA GGYSPVLFSN FAETQAECLV KRMQVQGFRI EKRLASLVLC  600
WQNRELMTVS AWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-101GRAS family protein