PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc028449.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 428aa MW: 47586.5 Da PI: 8.6007

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc028449.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc028449.1_g020.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	12.1	0.00058	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Cse_sc028449.1_g020.1 173 WKCGKCSKIYAVQSDWKAHSKTC 195 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MMFSTSVYST TSNRNSTSLS EDAPTSTISS VITSKAHHEF TPSMTLSSIS NHAQEHEYPY 60 PNHQKTKKKR NLPGNPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRNNK DEIKKRAYVC PEPSCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCGKCSK 180 IYAVQSDWKA HSKTCGTREY RCDCGTLFSR KDSFITHRAF CDALAEETAR LSAAAAAATL 240 SINTNNNPST ITHISHHPFN FQQNTQNLPS SLFPFNSSPT LNPTWIHNPT QIKPESMHNN 300 DHHHHLLPAI SLPVFQTLPP AAPSYLSATA LLQKAATVGV VGEHVGSTMS ELDITTPKYC 360 HMGLTSGDIA TWQKTESLTR DFLGLTSDQE VDHNGVDANV NVRNMLKYTG GIEMSDFGTS 420 ASEAWGNC

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MMFSTSVYST TSNRNSTSLS EDAPTSTISS VITSKAHHEF TPSMTLSSIS NHAQEHEYPY  60
PNHQKTKKKR NLPGNPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRNNK DEIKKRAYVC PEPSCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCGKCSK  180
IYAVQSDWKA HSKTCGTREY RCDCGTLFSR KDSFITHRAF CDALAEETAR LSAAAAAATL  240
SINTNNNPST ITHISHHPFN FQQNTQNLPS SLFPFNSSPT LNPTWIHNPT QIKPESMHNN  300
DHHHHLLPAI SLPVFQTLPP AAPSYLSATA LLQKAATVGV VGEHVGSTMS ELDITTPKYC  360
HMGLTSGDIA TWQKTESLTR DFLGLTSDQE VDHNGVDANV NVRNMLKYTG GIEMSDFGTS  420
ASEAWGNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	C2H2 family protein