PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc028437.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Trihelix
Protein Properties Length: 524aa    MW: 60875.2 Da    PI: 5.4715
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc028437.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.92e-1199148256
               trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 
                            W+++ev +L++++++ e+++r+       W++vs+k++e g+++s+++Ckek+e+
  Cse_sc028437.1_g040.1  99 WSNDEVIQLLRIKSSSENWFRDF-----TWDHVSRKLAEMGYKKSAEKCKEKFEE 148
                            *********************98.....9************************96 PP
2trihelix90.61.6e-28392490186
               trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                            rW+++evlaLi++r+++++ ++ ++                +  We++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s 
  Cse_sc028437.1_g040.1 392 RWPRDEVLALINIRSNVNNGIGGSSeehqignnkvgssiVGGSIWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SL 478
                            8**************9999998665567777788998888899*****************************************8.99 PP

               trihelix  75 ssstcpyfdqle 86 
                            +s+tcpy+++l 
  Cse_sc028437.1_g040.1 479 DSRTCPYYHELS 490
                            99*******996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    
MFDGVPVEQF HQFISTPSTR IPPNPSLIQP PPISTSTSLN FLSFDPILFH PQLPTPPPPH  60
QALFQSNPFL RPPTRDQYNV SEGKVDQEID LGVDINDSWS NDEVIQLLRI KSSSENWFRD  120
FTWDHVSRKL AEMGYKKSAE KCKEKFEEET CRSFSSTIGY NKNSGRYLIS EELDEHLYNN  180
AEENTHHPGT NEPPEVNVNH QEQLQVHERE VEEVETNIED KGQKGQFEKD PSEIMVQPAQ  240
DDEEVTKGKK RKRKHKKFKM VQGLCVDLVN KMMAQQEEMH QRLLEDMATR DEEKIKREEA  300
WRKEEMERVE REIHVWEREQ EMARDRQSTI TEFLNKITSS DQKIQLPLEM NLQDLQTNVT  360
NIQNPVPLSE MTKMPSLEIQ DRSTTKDDIG KRWPRDEVLA LINIRSNVNN GIGGSSEEHQ  420
IGNNKVGSSI VGGSIWERIS QGMLELGYKR SAKRCKEKWE NINKYFRKTK DANKKRSLDS  480
RTCPYYHELS KLYNQEKQAS LSNSPGLSSE EQETCMVTKI MPEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KKRKRK
2249257KKRKRKHKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-68Trihelix family protein