PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc028302.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family RAV
Protein Properties Length: 308aa    MW: 35400.9 Da    PI: 6.7739
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc028302.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.11.1e-0834711254
                    AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                           +g W A+I+    n  ++r++lg+f ++++Aa a+++a  kl+
  Cse_sc028302.1_g030.1 34 NGNWGAQIYT---N--NQRIWLGTFKSEKDAAIAYDRASIKLR 71
                           689****777...3..5**********99*********99998 PP
2B382.24.9e-26140238188
                            EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                            f+k+ltpsdv+k++rlv+pkk+a +h           g   + ++tl+++d + + W+++++y+k+s+++v+t+GW++Fvk++ L ++
  Cse_sc028302.1_g030.1 140 FQKELTPSDVGKLNRLVIPKKHAVTHfppvpdndqseG-FVNDEVTLSFYDVHRKLWKFRYCYWKSSQSFVFTRGWNQFVKEKSLMAK 226
                            99***************************999777642.334789******************************************* PP

                            -EEEEEE-SS.S CS
                     B3  78 DfvvFkldgr.s 88 
                            D + F+++++ +
  Cse_sc028302.1_g030.1 227 DKISFYYNENlE 238
                            ******987733 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MEEILYSNYG NNCHKVMDNC AYSQRHKGLV PQQNGNWGAQ IYTNNQRIWL GTFKSEKDAA  60
IAYDRASIKL RSSDPAFSWT ETAVLEAEFQ SLHNMETILA MIKDGSYQSK FDDFLLKTDK  120
ENDKDLSVQK SCGFSCRLLF QKELTPSDVG KLNRLVIPKK HAVTHFPPVP DNDQSEGFVN  180
DEVTLSFYDV HRKLWKFRYC YWKSSQSFVF TRGWNQFVKE KSLMAKDKIS FYYNENLETN  240
SGFLVIDTCF STSNIGSSLK LGMGTQVKYL VSKEDEGSVD DDQEMSDVKT KGFKLFGVQI  300
AYDKQCKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-82RAV family protein