PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc027891.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 259aa MW: 29741.6 Da PI: 5.5076 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.8 | 1e-16 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+++ +r++tf +R++g++K A ELS+LCd++v++ii s +++ Cse_sc027891.1_g020.1 11 INDSKKRKITFLRRKEGLIKTARELSTLCDIDVSMIICSDHQE 53 899************************************9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MGRVKTPMEL INDSKKRKIT FLRRKEGLIK TARELSTLCD IDVSMIICSD HQESPEIFPQ 60 DPVKLNDTIK AYKRKRVGDP GKIKSYGLYD YWNDRKNKTE DELAKVKKRN LEAKLPTSFE 120 CLNNSSEEQL RDFAYGLGIP IDEVKTEMPL LNNTNPITMM THFDYNYNDN KGIVSDNHVE 180 SSGSSNSSDV DNGYYPSVPM DQIFFGTDQR LMEALNTSSM KSEDVKDRYD GPKFDLKPEK 240 MQQLEQPQNM LSENVAITK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 1e-11 | M-type_MADS family protein |