PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc027886.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 324aa    MW: 36719.6 Da    PI: 8.5432
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc027886.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-07106127426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             +C +f+r G C  Gd+C FaHg
  Cse_sc027886.1_g030.1 106 TICVDFRR-GSCVKGDTCEFAHG 127
                            58999***.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MDSVCTKKSF QYLDIPPRKL FSRNLYQQNN DSPKVLPEET LFHKFLPSSS LDDESDPYVS  60
DHFRMYEFKI RKCTRSRSHD WTDCPFAHPG EKARRRCPRR FNYSGTICVD FRRGSCVKGD  120
TCEFAHGVFE CWLHPTRYRT EACKDGKNCQ RKICFFAHTS SQLRSLSPVD SPVSTGHCAY  180
CRCHPGVPHT TSPTSILDME KVLSPPTSPP FSQAPPGAAF SLVSRFSGRF KDPKNELMNP  240
HAILELMHSM KTMNMHASTE PTVNVNRIWK KDSFVGKDDQ LSFFAFSPPV SGSGSDSARI  300
FAKNNMINDL ANGPDLGWVN DLLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-65C3H family protein