PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc027838.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 973aa    MW: 108656 Da    PI: 6.7356
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc027838.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.3e-22125226199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F
  Cse_sc027838.1_g020.1 125 FCKNLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDYQWTFRHIFRGQPKRHLLTTGWSLFVSGKRLSAGDSVLF 211
                            89*****************************9445444.38*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                             +  +++++l+++++r+
  Cse_sc027838.1_g020.1 212 IR--DHKQQLLLGIRRA 226
                            *4..4677789999997 PP
2Auxin_resp85.88.8e-29251329183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+v+     s+seFv++++k+ ka+  +++s+GmRf+m fete+s +rr++Gt++g+ dld +rW+nS+Wrs++
  Cse_sc027838.1_g020.1 251 AAHAAANNSPFTVT-----SPSEFVIPLAKYYKAVCnNQLSLGMRFRMTFETEESGTRRFMGTITGIGDLDGLRWKNSQWRSIQ 329
                            79**********95.....99**********9998559*******************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    
MKEPANCHAN EGGVKKIMNM ELWQACAGQL VNLPAAGTYV VYFPQGHSEQ VAASMRKGMD  60
AQIPSYPNLQ SKLLCILRNV TLHADPETDE VYAKMTLQPV PAFDKEALLR SDLSMKAYKP  120
QTEFFCKNLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELVARDL HDYQWTFRHI  180
FRGQPKRHLL TTGWSLFVSG KRLSAGDSVL FIRDHKQQLL LGIRRATTLQ ANMSSSVLTS  240
DSMHIGVLAA AAHAAANNSP FTVTSPSEFV IPLAKYYKAV CNNQLSLGMR FRMTFETEES  300
GTRRFMGTIT GIGDLDGLRW KNSQWRSIQV GWDESTTGEK PNRVSVWEIE PVTAPFYIYP  360
SPFYGLNHPR QPGITEDESA GLDNLYKRSR PSLGEDTLMK DSGLSLVQWT NMQQSSLQPN  420
YMNSSPGPVL QNYSGPDVSR QMIHDSSQFN GQRPTTQLDQ VQKQTMPSTI NPLVSMMHPQ  480
QQMPGLSPQT IRHNVINQSP PQNQGQSQIQ YQNVLQQQSS VQNHQKQFGQ SQRQSQCQQK  540
SLLQPQLPDQ QQLQVQESQV QPLHKHHHQQ QSLLAPKDQQ NPMEMPRNDR QTNMWFPHVS  600
QKPKLHHQAP MDNFLTYGDG LLIAGTGHQS RVTDDGPSYS TSPSANDGPL MLPSVVDGRS  660
YKSTSIGVEE MAQASAQLLN TSGLETVSPN VDFVKDLQPK SDLKPLTNTL ESQNKGFISP  720
QAYLNHVGTQ VDYLDSSSSG TSVCVSQNDH LVHPNSIHQS FSTIQGDSET RIPFGSNNEN  780
HLGLSPMIPN PSITERMLDS SQDFQNKTGY ENPTKDNQPE LSSSTSFGVP DMTFNSIDST  840
MNGHDLLNTG VWAPMSQPFQ RMRTYTKVYK RGAVGRSIDI SAYSGYRELK DDLARRFGLE  900
GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVSCVQCI KILSPQEVQQ ISLDGNFGRS  960
SVLPNQACSS SDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein