PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc027804.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | Whirly | ||||||||
Protein Properties | Length: 233aa MW: 25528 Da PI: 10.0839 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 154.8 | 2.8e-48 | 65 | 194 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89 +yk+kaal+ +++ptf+++ sg +k++r+G+++l++ +a++erkyd ekkq fals+tev++++++++ ++ effhdpa+++s +G+ Cse_sc027804.1_g020.1 65 IYKGKAALSAAPILPTFSKMGSGCTKVDRRGTIMLTFRPAIGERKYDSEKKQLFALSVTEVGSFISMGPGDTREFFHDPAMQSSAAGQ 152 9*************************************************************************************** PP Whirly 90 vrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 vrk+l+++P++dG v n+++k+ne+f+vPv+ aefav+r++++ Cse_sc027804.1_g020.1 153 VRKSLSIKPIADG--------VANNILKTNERFTVPVTSAEFAVMREAFS 194 ************9........78999*********************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MNPRNTMKLS NLLQNSGNKF LQCKFRDEMA GNGFNLTSSA GYSTARQSYD ADGKISKRIF 60 ADYHIYKGKA ALSAAPILPT FSKMGSGCTK VDRRGTIMLT FRPAIGERKY DSEKKQLFAL 120 SVTEVGSFIS MGPGDTREFF HDPAMQSSAA GQVRKSLSIK PIADGVANNI LKTNERFTVP 180 VTSAEFAVMR EAFSFALPHI MGWAHSTNQL PDSVGLDSSK VHQPLGSASE WDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 5e-73 | Whirly family protein |