PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc027414.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 388aa MW: 44343.1 Da PI: 8.0297

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc027414.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.7	3e-14	64	123	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W++++++ + R++k+c++rw +yl Cse_sc027414.1_g010.1 64 KGLWSPEEDEKLLKYITRFGVGCWSSVPKHAVfylfwnleqkagLQRCGKSCRLRWINYL 123 678*******************************************************97 PP
2	Myb_DNA-binding	47.1	5.4e-15	129	172	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ Cse_sc027414.1_g010.1 129 RGLFSQQEEDLILHLHQVLGNR-WAQIAAQLP-GRTDNEIKNYWNS 172 7889****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
LQFIYFYFYL NIKKPIYLSP LSSLVAYIFV VITTASSFFL KHTNKNTNTL MGRHSCCVKQ 60 KLRKGLWSPE EDEKLLKYIT RFGVGCWSSV PKHAVFYLFW NLEQKAGLQR CGKSCRLRWI 120 NYLRPDLKRG LFSQQEEDLI LHLHQVLGNR WAQIAAQLPG RTDNEIKNYW NSCLKKKLIK 180 QGIDPNTHKP VSDNNDVKDK KIEFFSSSSS SMPMTAELDQ SYHINNGGLI LSSSSSMENN 240 SIRDTFLSKS VCDPLFLAEF QSSIDPIGYN SNLLAQYHQT NYETSLPNLA SFDHRNTSTE 300 FSDHSGSKMS SSTTNSSNIN TSLSAGFQNM TFEGEMFQFN GVNVKTEEGC VGQWQHHMHE 360 VQVNNASDFN IYPMGTMPGE YTDVFHQI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

LQFIYFYFYL NIKKPIYLSP LSSLVAYIFV VITTASSFFL KHTNKNTNTL MGRHSCCVKQ  60
KLRKGLWSPE EDEKLLKYIT RFGVGCWSSV PKHAVFYLFW NLEQKAGLQR CGKSCRLRWI  120
NYLRPDLKRG LFSQQEEDLI LHLHQVLGNR WAQIAAQLPG RTDNEIKNYW NSCLKKKLIK  180
QGIDPNTHKP VSDNNDVKDK KIEFFSSSSS SMPMTAELDQ SYHINNGGLI LSSSSSMENN  240
SIRDTFLSKS VCDPLFLAEF QSSIDPIGYN SNLLAQYHQT NYETSLPNLA SFDHRNTSTE  300
FSDHSGSKMS SSTTNSSNIN TSLSAGFQNM TFEGEMFQFN GVNVKTEEGC VGQWQHHMHE  360
VQVNNASDFN IYPMGTMPGE YTDVFHQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.2	7e-79	MYB family protein