PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc026498.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 585aa MW: 66116.4 Da PI: 7.225

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc026498.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.3e-13	392	438	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Cse_sc026498.1_g010.1 392 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 438 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MLHDPFIFLT IQPLLFFIFS SISPQFITVF RSICNLFRIP RKTLQFLESF LLLSFYYLVA 60 VFDMGDKFRL EEEVKGMLDS VLGREAREFF VWSASNKAPD EFRSKTSDLG VQEGLHKILE 120 GSDWNYVVFW QVSNSKSGKS ALIWGDGHRK ESKEHEEYNN NRDETVKRMR VLQTLHSCFN 180 GSHEGNIASK MDSISDLDMF YLTSMYYLFP FDKPSSPSQS FNTSRSVWAS DAKSCEEHYH 240 SRSFLAKLAR VQTLVLVPVK RGVLEIGSFK SIPEDQTFVS TVKTLFNGYH PPKVLPKIFG 300 QELSLGAKSA PKSGPISISF SPKLEDDMEF GSESYEIPPS FGGNSSNGNQ SMVLNSQALV 360 SGLDQSNQDL LTDRKPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK 420 MDKASLLGDA ISYITDLQSK IRILEAEKEV TGAPEVDFMA RKDDAVLRVS CPLDEHPVAR 480 VIKTLREHQM VTQDTNVTVE DGKVIHTFSF QGLAGGAAGE LKEKLDTFME YAYCQKGCLV 540 LDVWLQQRGV CAARGAFGIE FIAAYFSNED VAALLIRFMK HAFGH

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MLHDPFIFLT IQPLLFFIFS SISPQFITVF RSICNLFRIP RKTLQFLESF LLLSFYYLVA  60
VFDMGDKFRL EEEVKGMLDS VLGREAREFF VWSASNKAPD EFRSKTSDLG VQEGLHKILE  120
GSDWNYVVFW QVSNSKSGKS ALIWGDGHRK ESKEHEEYNN NRDETVKRMR VLQTLHSCFN  180
GSHEGNIASK MDSISDLDMF YLTSMYYLFP FDKPSSPSQS FNTSRSVWAS DAKSCEEHYH  240
SRSFLAKLAR VQTLVLVPVK RGVLEIGSFK SIPEDQTFVS TVKTLFNGYH PPKVLPKIFG  300
QELSLGAKSA PKSGPISISF SPKLEDDMEF GSESYEIPPS FGGNSSNGNQ SMVLNSQALV  360
SGLDQSNQDL LTDRKPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK  420
MDKASLLGDA ISYITDLQSK IRILEAEKEV TGAPEVDFMA RKDDAVLRVS CPLDEHPVAR  480
VIKTLREHQM VTQDTNVTVE DGKVIHTFSF QGLAGGAAGE LKEKLDTFME YAYCQKGCLV  540
LDVWLQQRGV CAARGAFGIE FIAAYFSNED VAALLIRFMK HAFGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	374	382	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-138	bHLH family protein